Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq221 132 5e-26 seq429 125 7e-24 seq634 111 1e-19 seq354 93.3 4e-14 >seq221 Length=83180 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || ||||| || ||||| || || | || |||||||| ||||| |||||||| | Sbjct 43850 CCTCCACGCAACCGAAGCACCAAGTGCAGTGTAGACTCCTTCTGAATATTGTAATCTGCC 43909 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| ||||| |||||||| || ||| |||| | | |||||| || || ||| Sbjct 43910 AATGTACGCCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGTCTCTGCTGATCAGGCGGG 43969 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || |||||| ||||| | ||| | ||||| | ||||||| Sbjct 43970 ATCCCCTCCTTATCCTGAATTTTCGACTTGACATTCTCAATCGTATCTGAAGACTCGACC 44029 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || || || || ||||| ||||||||||||||| Sbjct 44030 TCGAGGGTTATGGTCTTCCCAGTCAGTGTTTTGACGAAAATCTGCATG 44077 >seq429 Length=364352 Score = 125 bits (138), Expect = 7e-24 Identities = 175/244 (72%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 130992 TCACTTTCACCATGAGCCACCG-CGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTT 131050 ||||||| | ||| | || || ||||| || || || || |||| || |||||||||| Sbjct 147055 TCACTTTAATCATCATCCCCCCTCGCAAGCGAAGAACCAAGTGTAACGTTGACTCCTTTT 146996 Query 131051 GAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAAC 131110 | ||||| ||||| || ||||||| || || | |||||| || ||| | || || | Sbjct 146995 GGATGTTATAATCCGCCAGGGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAATC 146936 Query 131111 GCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAG 131170 |||||| || || ||||| || ||||| || || ||| ||||| | ||| | | Sbjct 146935 TCTGCTGATCAGGTGGGATCCCCTCTTTATCCTGAATCTTCGACTTGACATTCTCAATCG 146876 Query 131171 TATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCT 131230 |||| | ||||| | || | |||| ||||| || || || ||||| |||||||||| Sbjct 146875 TATCAGATGACTCTACTTCCAGAGTAATAGTTTTTCCCGTCAGGGTTTTAACGAAAATCT 146816 Query 131231 GCAT 131234 |||| Sbjct 146815 GCAT 146812 >seq634 Length=251403 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 || || | |||||| || || ||||| | ||| ||||||||||| ||||| ||||| ||| Sbjct 209647 CCTCCTCTCAAACGGAGGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAATCTGCT 209588 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 ||| ||||| || || | |||||| || ||| | || ||||||||||| || || || Sbjct 209587 AATG-TGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGATCAGGTGG 209529 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| || ||||| || || ||||| | || | ||| || | ||||| | Sbjct 209528 AATTCCCTCCTTGTCCTGAATCTTAGACTTGACATTTTCGATAGTGTCAGAAGACTCCAC 209469 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || ||||| || || || ||||| Sbjct 209468 CTCCAGGGTGATGGTCTTCCCTGTGAGTGTTTTCACAAAGATTTGCAT 209421 >seq354 Length=2136 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | ||| || ||||| || || | || |||||||| || ||||||||||| | Sbjct 1936 CCTCCTCTCAAGCGAAGCACCAAGTGCAATGTAGACTCCTTCTGGATGTTGTAATCTGCC 1995 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | ||||||||| || || || Sbjct 1996 AACGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGA 2055 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 2056 ATACCTTCCTTGTC 2069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472007607859200