Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq450 140 2e-28 seq197 104 2e-17 seq429 87.8 1e-12 seq221 87.8 1e-12 >seq450 Length=1408 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1071 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1130 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1131 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1165 >seq197 Length=5048 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 3395 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCCC 3336 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 3335 GTCGGTATTTAGCCTTA 3319 >seq429 Length=364352 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 38083 AATCATTA--CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATT 38140 |||||| | || |||| ||| || | ||||| || | || ||||||||| || || Sbjct 147048 AATCATCATCCCCCCTCGCAAGCGAAGAACCAAGTGTAACGTTGACTCCTTTTGGATGTT 146989 Query 38141 GTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTG 38200 ||||| | || || | || || || || ||||| || || || | | || || Sbjct 146988 ATAATCCGCCAGGGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAATCTCTGCTG 146929 Query 38201 ATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCC 38260 ||| | |||| || ||||| ||| ||| || ||| ||||||| | ||||| Sbjct 146928 ATCAGGTGGGATCCCCTCTTTATCCTGAATCTTCGACTTGACATTCTCAATCGTATCAGA 146869 Query 38261 ACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| | ||||||||||| ||||||| |||||| ||||| |||||||| Sbjct 146868 TGACTCTACTTCCAGAGTAATAGTTTTTCCCGTCAGGGTTTTAACGAAAATCTGCAT 146812 >seq221 Length=83180 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | ||| || | |||||| || || || |||||| |||||||||||||| | | Sbjct 43850 CCTCCACGCAACCGAAGCACCAAGTGCAGTGTAGACTCCTTCTGAATATTGTAATCTGCC 43909 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| | || || | || || || || || || || | || ||||| | ||| Sbjct 43910 AATGTACGCCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGTCTCTGCTGATCAGGCGGG 43969 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || || ||| |||||| ||| ||||||| | |||||| | || || Sbjct 43970 ATCCCCTCCTTATCCTGAATTTTCGACTTGACATTCTCAATCGTATCTGAAGACTCGACC 44029 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || |||| ||||| ||||| ||||||||| Sbjct 44030 TCGAGGGTTATGGTCTTCCCAGTCAGTGTTTTGACGAAAATCTGCATG 44077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943607691280