Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq232 215 7e-51 seq457 210 3e-49 >seq232 Length=44964 Score = 215 bits (238), Expect = 7e-51 Identities = 406/589 (69%), Gaps = 6/589 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 ||||| ||||| ||| || ||||| || | | || || |||||||| || || | | Sbjct 11762 CATGCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCGTTGGAGAATGTCAAT 11703 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 || || | || || |||||||| ||||| | |||| | || || ||||| || ||||| Sbjct 11702 CCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGG-CACAGAAGGATCCGGAGAAGAA 11644 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 32839 ||||||||| || || || |||| | || |||| | || ||||| | || Sbjct 11643 AATTCCTTCAACGCAGGCGAATGCAACCAATCGCTCTGCGAAAGAATCGCTGGACTCAAT 11584 Query 32840 CCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 32898 ||| || || |||||||| |||||||| || || || | |||||| || |||| | Sbjct 11583 CCATCTCATG-GCCCAATCTGCCTTCTTCTTCACCACTGGTACTGTCTCGATGGCATGGA 11525 Query 32899 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 32958 | || | ||| |||||| | ||| || | ||||| |||| || ||||||||||| | Sbjct 11524 ACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTCAAGCAGGAGACTATACATCT 11465 Query 32959 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCT 33018 | |||||| || |||||||| ||||| ||||| || || ||| ||||| | |||| Sbjct 11464 CGCTATGAATATTCTCAATGGCGATTTGGAATCCATAAAAAGCTCTGGCCTCTGGGATCT 11405 Query 33019 GTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 33078 | || || | |||||||| | | ||||| ||||| || || || ||| || |||| Sbjct 11404 GCACCTCCTTCAAAAATCGTACCCCCAAATTCTCATTTACGATGCCATCAGATGCAGCAA 11345 Query 33079 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCA 33137 | || || | ||||| || |||| | | |||| || || | | | ||| | Sbjct 11344 AGAATGCAAGCACATGAGAGATGAAATGTCTCTCGT-TGTCATTCAATCCTTCCCAGTGC 11286 Query 33138 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 33197 ||||| ||| | ||| || ||||| ||||||| || || ||||||||||| || Sbjct 11285 TTGATGTCTCCTCCCAGATCAACCTCTTCAGCTGTCCAGAAGGAAGCCTCTGCCTTCTTG 11226 Query 33198 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 33246 ||||| | |||||| |||| ||| | || || || | || |||| || Sbjct 11225 TACATTTCCCAGATTTCATTATACTTGATCGGGAACAAGACGAATCGAT 11177 >seq457 Length=513114 Score = 210 bits (232), Expect = 3e-49 Identities = 597/909 (66%), Gaps = 10/909 (1%) Strand=Plus/Plus Query 62798 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 62857 || || |||||||| | ||||| | || || || || || || ||||||||| |||| Sbjct 208542 ATGATTTCAGTGCACAAGTTACTGGATTTAATTGTGCCCAAGTTCTGTTGATTAGACTTT 208601 Query 62858 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 62917 |||| | |||||| | || ||| | ||| | || || |||| |||| ||| | Sbjct 208602 CTGTTGGCAGAATCCTTGAAGAGCATGTAAGGATTTCCCGTCTCAACTTGAGCTTCGAGG 208661 Query 62918 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGT-ATCTCTTTTCTCT--TTCG 62974 || || ||| | | | ||||| || || || | | | | ||| ||| Sbjct 208662 ATGGCAAACCAAAGCTGTTGGGCCTTGATG---GACTTACGAGCACGTCCCTCGCGTTCA 208718 Query 62975 TATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCA 63034 ||| ||| ||| ||| || | |||||||| | | | || ||||| |||| Sbjct 208719 TATTTCAAATATAATTCTTCAAATTGTTCTCCCCAGCAGTCGGCAAGACCAGGGGCTTCA 208778 Query 63035 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 63094 | ||||| | ||| ||||||||||| || | | || | || |||||||||||| || Sbjct 208779 TTTGGACAAAACAAGGACCACTCTCCTCCAGCTTCAACCCTTTGCATAAAGAGATCTGGG 208838 Query 63095 ATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63153 ||||| | | | || || | |||||| | || ||| || || || |||||| | Sbjct 208839 ATCCACA-ACCCGTAGAACAAATCTCTTGCCCTCGCTTCTTCTTTGCCGTGATTCTTCCT 208897 Query 63154 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63213 | || || | | | |||||||| ||||| || |||||||| ||||| | |||| Sbjct 208898 CAATTCAAGCCAGTCGAAAATATCAGCGTGCCAAGGCTCCAAGTACATGGCAAACGCTCC 208957 Query 63214 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 63273 | || ||||||||||| | ||||| || |||| ||| | || | | ||| Sbjct 208958 TTTTCTCTTCCCCCCTCCCTGATCAACATATCTGGCCGTGTCATTGAACACACGGAGCAT 209017 Query 63274 TGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT 63333 || | ||||||||| || || ||||| || || ||||| ||| | || | || Sbjct 209018 AGGTACAATACCATTCGAAGTTCCATTTGTTCCACGAATATAAGAACCAGTCGCTCTGAT 209077 Query 63334 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63393 |||| || || ||||| || |||||||| | || ||||| | || || || | Sbjct 209078 ATTATGCATAGACAGACCGATGCCCCCTGCACTCTTGGAGATGCAAGCACACTCCTTCAG 209137 Query 63394 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 63453 || ||||| ||||| || |||||||||| | ||||| | | ||| || ||| | Sbjct 209138 AGTGTCATAAATGCCTTCAATACTATCATTCTTCATGCAGATCAAAAAGCACGAAGAAAG 209197 Query 63454 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTC 63513 || | || ||| || ||||| || | || ||||| || || || |||||| | | Sbjct 209198 CTGAGGGCGTGGAGTACCGGCATTGAACAGAGTTGGAGAGGCATGCGTGAACCATCTCTG 209257 Query 63514 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA-TCCCATTGATGAATTCCTACTG 63572 ||| || || | ||| |||||||| |||| || ||| || | ||| || ||||| |||| Sbjct 209258 AGACAGCAGGTGGTATGTCTCAATGGCTGCATCAATATTCTCCTTG-TGGATTCCAACTG 209316 Query 63573 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 63632 || | ||| | ||||||||| || || || |||| || | | | ||| | Sbjct 209317 AAACTCTCATGAGCATGTGCTGTGGCCTCTCCACGACACGACCATTGACCCTGAGCAAAT 209376 Query 63633 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63692 | || |||| |||||| ||||||||||| | ||| || || || ||||| | || Sbjct 209377 ATGAACGCTCCAGAGTTTTGAAACCAAAATAATCGTAATCGAAATCACGATCGTAGACAA 209436 Query 63693 TAACCGAGT 63701 | |||||| Sbjct 209437 TCTCCGAGT 209445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633625030048000