Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq634 120 3e-22 seq354 87.8 2e-12 seq221 84.2 2e-11 >seq634 Length=251403 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || || ||||||| | || |||||||| ||| Sbjct 209421 ATGCAAATCTTTGTGAAAACACTCACAGGGAAGACCATCACCCTGGAGGTGGAGTCTTCT 209480 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | ||| | || | ||| ||||| || || ||||||||||| || Sbjct 209481 GACACTATCGAAAATGTCAAGTCTAAGATTCAG-GACAAGGAGGGAATTCCACCTGATCA 209539 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| || || || || || ||||||| ||||| | | ||||| || Sbjct 209540 GCAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCACATTAGCAGATTATAA 209599 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| || || || | ||||| || || | | |||||||||| Sbjct 209600 CATCCAAAAGGAGTCTACCTTGCATTTGGTCCTCCGTTTGAGAGGAGGAA 209649 >seq354 Length=2136 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACT 25091 ||||||| | || || ||||||||||| || || || | ||| | || | ||| Sbjct 2128 CCATCACGCTTGAGGTAGAGTCGTCTGATACAATTGAAAATGTCAAGTCGAAGATTCA-G 2070 Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| ||||| ||||| || ||||| | || ||||| ||||| || | || Sbjct 2069 GACAAGGAAGGTATTCCCCCTGATCAGCAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAG 2010 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||||| ||| |||||||| || || || || || || | || || ||||| Sbjct 2009 GATGGGCGCACGTTGGCAGATTACAACATCCAGAAGGAGTCTACATTGCACTTGGTGCTT 1950 Query 25212 AGGCTAAGAGGAGGA 25226 | | ||||||||| Sbjct 1949 CGCTTGAGAGGAGGA 1935 >seq221 Length=83180 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 24990 AACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTG 25049 |||| || ||||| || || || || || |||| || || |||| || |||| || Sbjct 44085 AACGCGACCATGCAGATTTTCGTCAAAACACTGACTGGGAAGACCATAACCCTCGAGGTC 44026 Query 25050 GAGTCGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCC 25108 ||||| || || || || ||| | ||| | |||| ||| || || || ||||| || Sbjct 44025 GAGTCTTCAGATACGATTGAGAATGTCAAGTCGAAAATTCAG-GATAAGGAGGGGATCCC 43967 Query 25109 ACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGG 25168 ||||| || ||| | | || || || || || || | || |||| || || ||| Sbjct 43966 GCCTGATCAGCAGAGACTGATCTTCGCTGGGAAGCAGCTTGAGGATGGGCGTACATTGGC 43907 Query 25169 CGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 |||||||||||||| || || || || || || || ||||| || | | |||||| Sbjct 43906 AGATTACAATATTCAGAAGGAGTCTACACTGCACTTGGTGCTTCGGTTGCGTGGAGGA 43849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433323352557200