Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq880 717 0.0 >seq880 Length=74269 Score = 717 bits (794), Expect = 0.0 Identities = 736/959 (77%), Gaps = 2/959 (0%) Strand=Plus/Minus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 |||||| | || | ||||||||||| | | ||||| || ||||| || | ||||| Sbjct 61297 AACCGTTTATACATCGGTTGGTTTGGTGTATTAATGATCCCTACTCTATTAACTGCAACT 61238 Query 166141 ATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199 | | || |||||| |||| || | || || ||||| || ||||||||||| |||||||| Sbjct 61237 A-CAGTATTCATCATCGCATTTATCGCTGCTCCTCCAGTTGATATCGATGGTATCCGTGA 61179 Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTC 166259 ||| || | || || || | || ||||||||||||||||| ||||| ||||| || | Sbjct 61178 GCCTGTTTCTGGTTCATTATTATACGGTAACAACATCATCTCAGGTGCGGTTGTTCCAAC 61119 Query 166260 CTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATG 166319 || ||||| |||||| | || ||||| || ||||||||||| || || | ||||| || Sbjct 61118 TTCAAACGCGATTGGTTTACATTTCTACCCAATCTGGGAAGCTGCTTCTTTAGATGAGTG 61059 Query 166320 GCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGC 166379 | | || ||||||||||||| ||| | || || | || ||| || | || | | | | Sbjct 61058 GTTATACAACGGTGGTCCTTACCAATTAGTTGTATGTCATTTCTTCTTAGGTGTATGTTC 60999 Query 166380 CTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 166439 |||||||||||||| |||||||| |||| ||| | ||||||||||| ||||| || Sbjct 60998 TTACATGGGTCGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGT 60939 Query 166440 AGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 166499 || ||||| ||||| ||||| ||||| | || || ||| | | || || ||||||| Sbjct 60938 TGCTTACTCAGCACCAGTTGCTGCAGCTACAGCTGTATTCATCATTTACCCAATCGGTCA 60879 Query 166500 AGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGT 166559 ||||||||||||||| | ||||| | |||||| || || ||||||| ||||||||| Sbjct 60878 AGGTTCTTTCTCTGATGGTATGCCATTAGGTATCTCAGGTACATTCAACTTCATGCTTGT 60819 Query 166560 CTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGT 166619 |||||||| |||||||||||| | |||||||| ||||||||| | ||||| || ||||| Sbjct 60818 ATTCCAAGCTGAGCACAACATCTTAATGCACCCATTCCATATGTTAGGTGTTGCTGGTGT 60759 Query 166620 ATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCG 166679 ||| ||||| ||| | ||||| || |||||||| || || ||||| || | |||| Sbjct 60758 ATTTGGTGGTTCATTATTCTCAGCTATGCACGGTTCACTTGTAACTTCTTCATTAATCCG 60699 Query 166680 TGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 166739 ||| || ||||||| || || ||| | |||||||| ||||||||||||||||| || Sbjct 60698 TGAAACTACTGAAAACGAATCAGCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAAAC 60639 Query 166740 CTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 166799 ||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||| || Sbjct 60638 TTACAACATCGTAGCTGCTCATGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATT 60579 Query 166800 CAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 166859 ||||||||||| || | ||||||||| | || || ||||| || || ||||| ||||| Sbjct 60578 TAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGGTT 60519 Query 166860 TACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 166919 |||||| | ||| || || |||||||| ||| | || ||||||||||||||||| || Sbjct 60518 CACTGCTTTAGGTATTTCAACTATGGCATTTAACTTAAATGGTTTCAACTTCAACCAATC 60459 Query 166920 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGG 166979 | | ||| || |||||||| ||||||||||||| ||| | | ||||||||| Sbjct 60458 AGTTGTAGATTCACAAGGTCGTGTAATCAACACTTGGGCTGATATTGTTAACCGTGCTAA 60399 Query 166980 TCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTG 167038 | ||||| ||||||||||| || | |||||||||||||| || || ||| | |||| Sbjct 60398 CTTAGGTATTGAAGTAATGCATGAAAGAAATGCTCACAACTTTCCACTTGATTTAGCTG 60340 Score = 513 bits (568), Expect = 2e-140 Identities = 721/1005 (72%), Gaps = 8/1005 (1%) Strand=Plus/Plus Query 167312 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTT 167371 |||||||||||| || || || || || ||||| || |||||||| ||| | | || Sbjct 49515 GATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGTTTATTATTATTA 49574 Query 167372 CCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGTTACGAGCTGG 167431 || ||||||| | ||| | ||||||||| | ||||| | || |||||||| ||| Sbjct 49575 CCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCATGG 49634 Query 167432 TATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAGTG 167491 ||||| || || || || ||| | | || ||| |||||| | || || ||||| Sbjct 49635 TATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAATTTCTTAACAGCTGCAGTT 49694 Query 167492 TCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 167551 || || ||||| | |||||||||||| | | || | ||||| || || | || Sbjct 49695 TCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCAGAAGCACAA 49754 Query 167552 GGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGA 167611 || || || | | ||||| || | || || | ||| ||||||| || | || || Sbjct 49755 GGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATTACATGGT 49814 Query 167612 GCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGTAGACTAGTAGGTATC 167671 | |||||| | || || |||||| | || ||||||||||| | |||| || Sbjct 49815 TCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGTTCAGTAAAAATT 49874 Query 167672 CGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTC 167731 ||||| || || || || ||||| || | || ||||| || || || || ||||| | Sbjct 49875 CGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCAGTTTTCTTA 49934 Query 167732 ATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATA 167791 ||||||||| | || || || | |||||||||||||| ||||||||||| || || Sbjct 49935 ATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTTGCCGCAATC 49994 Query 167792 TTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATG 167851 || |||| | |||||| | || ||||||||||||||||| | ||||| ||||||||| Sbjct 49995 TTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTCCATATG 50054 Query 167852 ATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTA 167911 ||||| || |||||| | |||| | || || || | ||| |||||||||| || ||| Sbjct 50055 ATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGTGCAACTGTA 50114 Query 167912 GAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACT 167971 || || || | | |||||||||||| ||||| || ||| |||||| | | ||| Sbjct 50115 GAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTTAACCCAACT 50174 Query 167972 CAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGT 168031 || | || ||||| ||||| ||||| ||||| || || |||||||| |||||||||||| Sbjct 50175 CAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAAATTTTTGGT 50234 Query 168032 ATTGC--TTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGG 168089 | || ||||| ||||| |||||||| || ||||||||| | || || || || | | Sbjct 50235 GTAGCATTTTCA--AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTG 50292 Query 168090 GACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTT-CGTGCTTATGAC 168148 | | |||| ||| | ||||| | | ||| | || |||| ||| ||||| ||||| Sbjct 50293 GTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGC-TTTAAACTTACGTGCATATGAT 50351 Query 168149 TTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAA 168208 ||||| ||||| ||| || | || || || ||||| || || |||||||||||||| ||| Sbjct 50352 TTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTATACAAAA 50411 Query 168209 AA-CATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGA 168267 || ||| | | ||||||| | || || ||||||||| | ||| || || ||||| Sbjct 50412 AATCAT-TTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCCTCATGA 50470 Query 168268 AAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 ||| || ||||||||||| || ||||| ||| | || |||||||| Sbjct 50471 AAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCT 50515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567225760448000