Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq232 223 4e-53 >seq232 Length=44964 Score = 223 bits (246), Expect = 4e-53 Identities = 618/931 (66%), Gaps = 25/931 (3%) Strand=Plus/Minus Query 92787 ATTCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCC 92846 |||||| || ||| |||||||| || |||||| | || || ||||||||||||||||| Sbjct 12069 ATTCATCACTCCAGCCTTTTGGTACTCGCCAACTCTCTTCTCGAAGAAATTTGTCTTTCC 12010 Query 92847 TTCCAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACC 92904 | |||||| ||| | || | | || |||||| | || || ||| ||| Sbjct 12009 CTGCAAAGAAATCAGTTCCATCCAATCGAATGGATTGGCAACATTGTACACCTTGTCATT 11950 Query 92905 GATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAA-TCAC 92963 || | || | |||||||||||||||||| |||||||| ||||| | || | Sbjct 11949 CCCCAGGGCAACCAGAAGTCTATCAGCTACAAATTCAATGTACTGTGACATGAGCCTCGC 11890 Query 92964 AATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAA 93023 ||||| || | || ||||| || |||||| | || || ||||| | | ||| Sbjct 11889 G-TTCATGCCGATCAGGTCGACAGGCAGGGCGTCGCAAATAAACTCCTTCTCTAATTCAA 11831 Query 93024 CGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGG--TTTTTGTACGACATAATT 93081 |||| | ||| ||| ||| | ||| || ||| || || |||| || | Sbjct 11830 CGGCGTTCGTCACGATATCTGCGATTCT-CTCCTTGCTGAGCTTGTTGTTGAGCA-AGGA 11773 Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||| || | ||| ||||| || || || | || || || || || |||||||| ||| Sbjct 11772 GTAGATGAGGCATGCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCGTTGGA 11713 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-C 93200 |||||| || ||||| | ||| ||||| || |||||||| | || | | || || | | Sbjct 11712 GAATGTCAATCCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGGCA-CAGAAGGATC 11654 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | || || || || ||||| ||| || ||||| || | || || || ||| | Sbjct 11653 CGGAGAAGAAAATTCCTTCAACGCAGGCGAATGCAACCAATCGCTCTGCGAAA------G 11600 Query 93261 AATTACTG--CTGA-TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTG 93317 ||| ||| || | ||||| | | |||||||| || || ||||| | |||| || Sbjct 11599 AATCGCTGGACTCAATCCATCTCATGGCCCAATCTGCCTTCTTCTTCACCACTGGTACTG 11540 Query 93318 TTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 | ||||| || | || || | | || | | ||| |||||||| || | | Sbjct 11539 TCTCGATGGCATGGAACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTCAAGCA 11480 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 ||| |||||| || ||| | |||||| || || ||||||||||| || ||| || Sbjct 11479 GGAGACTATACATCTCGCTATGAATATTCTCAATGGCGATTTGGAATCCATAAAAAGCTC 11420 Query 93438 TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATAC 93497 | || || | ||||||||| || | |||||| | | | ||| ||||| || || | Sbjct 11419 TGGCCTCTGGGATCTGCACCTCCTTCAAAAATCGTACCCCCAAATTCTCATTTACGATGC 11360 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTA 93556 |||| ||||| ||||| || || | | ||| || |||||| |||| | || || | Sbjct 11359 CATCAGATGCAGCAAAGAATGCAAGCACATGAGAGATGAAATGTCTCTCGTTGTCATTCA 11300 Query 93557 AGCTTATCCCAATCGGATAGA--TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACG 93614 | | | ||||| | | | || ||| | ||||| || ||||| | ||||| || | Sbjct 11299 ATCCT-TCCCAGT--GCTTGATGTCTCCTCCCAGATCAACCTCTTCAGCTGTCCAGAAGG 11243 Query 93615 ATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAA 93674 | || ||||| || |||||||| ||||| || || | ||| | || || || | ||| | Sbjct 11242 AAGCCTCTGCCTTCTTGTACATTTCCCAGATTTCATTATACTTGATCGGGAACAAGACGA 11183 Query 93675 AACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 | |||| | ||| || | ||||| || || Sbjct 11182 ATCGATCACTGTTCTCGTCCAGTAAGGGTTC 11152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854674531200