Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq634 116 3e-21 seq354 95.1 1e-14 >seq634 Length=251403 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| ||||| ||||| | || || || || |||| || || ||||| | Sbjct 209419 AGATGCAAATCTTTGTGAAAACACTCACAGGGAAGACCATCACCCTGGAGGTGGAGTCTT 209478 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || || | || || |||| || ||||| ||||||||||| |||||||| |||| Sbjct 209479 CTGACACTATCGAAAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCTGATC 209538 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||| | || || || || || ||||| || ||| ||||| | | ||||| | Sbjct 209539 AGCAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCACATTAGCAGATTATA 209598 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||| ||||| || || ||| | ||||| || | || ||| | ||||| Sbjct 209599 ACATCCAAAAGGAGTCTACCTTGCATTTGGTCCTCCGTTTGAGAGGAGG 209647 >seq354 Length=2136 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 |||| ||||| || || | | ||||| | || || |||| || ||||| |||| Sbjct 2125 TCACGCTTGAGGTAGAGTCGTCTGATACAATTGAAAATGTCAAGTCGAAGATTCAGGACA 2066 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 |||| |||||||| || ||||| || ||||| || ||||| ||||| ||| | |||||| Sbjct 2065 AGGAAGGTATTCCCCCTGATCAGCAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAGGATG 2006 Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGAT 22435 ||||| | | ||||||||||| || || || || || | || || || | || | Sbjct 2005 GGCGCACGTTGGCAGATTACAACATCCAGAAGGAGTCTACATTGCACTTGGTGCTTCGCT 1946 Query 22436 TGCGCGGAGG 22445 || | ||||| Sbjct 1945 TGAGAGGAGG 1936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723498417200