Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq661 334 2e-86 seq795 127 4e-24 seq232 109 1e-18 >seq661 Length=126702 Score = 334 bits (370), Expect = 2e-86 Identities = 1167/1798 (65%), Gaps = 89/1798 (5%) Strand=Plus/Plus Query 279344 AGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCT---GCT 279400 |||||||||||| || |||| || ||||| || || ||||||| ||| | || | | Sbjct 90989 AGGTGAGGATCTTTGCAACTGCGAATTCTCCCTTGCTTATGGTGCCAAGGTGCTTTTGAT 91048 Query 279401 AAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGG 279460 || |||||| | || | |||||||| | || ||||||||| || || || || Sbjct 91049 GAATGCTACCCTTC---ACTTGAAGCGTGGACAGCGTTATGGTCTCTGTGGACCAAACGG 91105 Query 279461 AGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCT-- 279518 | || ||| ||| | ||| | |||||||| || || ||| | || ||||| || Sbjct 91106 ATGCGGAAAGTCCACATTGATGAGAGCCATTGCCAATGGACAGGTCGATGGATTCCCACC 91165 Query 279519 AACGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGAT 279578 || | | ||| | | || |||||||| |||||||||||||| |||| | || Sbjct 91166 AAAGGAA--GAGCTCCGCACTGTGTATGTTGAGCACGACATCGATGCCTCCGAGGCTGAG 91223 Query 279579 AGCACTGTGTTCGACTTCCTAACGTCTGACAA---------TCAGGTTATGGAAATCAGC 279629 | | || | |||||| | || ||| | |||| |||| || | Sbjct 91224 ACTGCAGTCGTTGACTTCATCACCAATGATGAGACTTTGGCTCAG--TATGAGAA---GG 91278 Query 279630 TCTCCTGAGGAAATCATCCAGAAACTG----GAGG-CCAATGGTTTTGATGAAAGAATGC 279684 || || ||||| |||||| ||| || || |||||| || |||| Sbjct 91279 TCACCA-AGGAAGAAGTCCAGA--CTGCTTTGACTTCCGTTGGTTTCTCCGAGGATATGC 91335 Query 279685 GTAATCTGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCG 279744 ||| | || | | |||| || || || |||||||||||||| || | | || | Sbjct 91336 AGAATGGAGCTGTGGCTGCTCTCTCTGGAGGATGGAAGATGAAGCTTGCTTTGGCCCGTG 91395 Query 279745 CCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCA 279804 | || | || || ||| | | || | |||||||| || ||||| | ||| | Sbjct 91396 CTATGTTGATGAAGGCTGATATTATGTTGTTGGATGAGCCTACAAACCATCTTGACGTTA 91455 Query 279805 CCAACGTAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTG 279864 ||||||| ||| | || |||||| || |||| | | || | || |||||| Sbjct 91456 CCAACGTTCAGTGGTTGGTTGACTACCTCACATCCCTGACGGACGTGACATCTGTCATTG 91515 Query 279865 TCTCTCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAA 279924 | || ||||||||||| ||| | || |||||| ||| || ||||| |||||| | Sbjct 91516 TGTCGCACGACTCTGGATTCTTGGACAAGGTGTGCACTGGTATTATTCATTATGAGGGA- 91574 Query 279925 ATCTGAAGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTG--GCAAAGCGCCCTGA 279982 | ||| || |||| || || ||| || ||| | || ||| || || || Sbjct 91575 --CGCAAGATCCGCAAGTACCGTGGAAACTTGGCTGAACTTGTCAAGCACAGA--CCAGA 91630 Query 279983 GGCGGCCGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGG 280042 ||| ||||||| | || |||| || ||||||||| | || |||||||| Sbjct 91631 GGCCAAGTCCTACTACAATTTGGAGGATGCTCAGACCAAGTGGGTCCTTCCAGAGCCAGG 91690 Query 280043 GTTTCTGGAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTT 280102 || || |||||||| | || ||||| | || ||| | ||| | | || || ||| Sbjct 91691 ATTCCTTGAGGGCATTAACTCCAAGGACAGAGCTATCCTCAAGATGAGAGGAGTGCACTT 91750 Query 280103 TGCTTATCCC---AATGGCCCCAACATCTTCAGCAGTGTCA-ACTCGCAGGTTTCTATGA 280158 || |||||| | || | || || ||| |||| |||| ||||| ||| | | Sbjct 91751 TGGTTATCCAGGAACTGACAAGAAGATTCTCAATGACGTCACACTC-CAGGTGTCTCTCA 91809 Query 280159 ACTCACGGATTGG-TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTC 280217 |||| || ||| ||| ||||||| || || || |||||||||||| | |||||| | Sbjct 91810 ACTCCCGTGTTGCCTGTG-TTGGACCAAACGGAGCTGGTAAGTCTACCATGATCAAACTT 91868 Query 280218 CTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATG 280277 || ||||| ||| || | | ||| || | || |||||||| || ||| |||| | Sbjct 91869 CTCACTGGAGAGTTGGAGCCAAATGATGGATTTGTGTGGAAGCACCCTAACTTGCGTGTA 91928 Query 280278 GCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAAC 280337 || || || || |||||||||||||| || || |||| || |||| | |||||| ||| Sbjct 91929 GCATATGTTGCCCAGCACGCTTTCCATCATATTGAGAGTCATTTGGATAAGACTCCAAAC 91988 Query 280338 CAATACATTCAGTGGCGCTATGCAAGTGGGCAGGATCTGGAGTC---------GGTGGAT 280388 || |||||||||||||| || || | || |||| || | ||| ||| Sbjct 91989 CAGTACATTCAGTGGCGTTACGCTACCGGAGAGGACAGAGAAGCCCAGAGCAAGGTTGAT 92048 Query 280389 CGCTCTGAACGCAATGCCGCCGATACCGCCAAGATGTATGAGGTCAAGGT---CATCGAT 280445 || | ||| || | | | || |||||| | | || ||||| || ||| Sbjct 92049 CGTT-TGACCG--AGGAAGAAGAG---GCCAAGCTCAAGGAACAGAAGGTGGCCACCGAA 92102 Query 280446 ---GGTGTCAAGAAGTCTCTCGACCGCATTGGAGGCCGCAGGAAGCTAAAGCGCTCCTAT 280502 ||||||||| ||| | || || |||| | ||||| ||| || Sbjct 92103 CAGGGTGTCAAGCGCTCTGTTGAGAAGCTTCTCAACCGCCGTAAGCTGAAGAAGGGTTAC 92162 Query 280503 GAGTATGAGGTGTTCTGGAAGAATGACG---------AGACCTCAACTTGGATTGTCCGC 280553 ||||| ||||| ||| |||||| | ||||||| |||| ||| || | Sbjct 92163 GAGTACGAGGTTGAGTGGCAGAATGCCCCAGCTGGACAGACCTC---TTGG-TTGACC-C 92217 Query 280554 GAGACC--CTGGAGCAGCTTGGCTTCCAAAAGCTCCTCAATGACATCGACGCCA---AGG 280608 | | | || || || | || | | | ||| | | || || || || |||| ||| Sbjct 92218 GTGCTCAGCTCGAAGAGATGGGTTACGAGAAGATGGTTAACGAGATTGATGCCAGAGAGG 92277 Query 280609 ATGCCGCTGCCAATGGTCTGCTAGGGAAACCTCTGACTGCCAAGAATGTTGAGGACCATA 280668 |||||| ||| ||| || | || ||||| ||||||| || |||||| | Sbjct 92278 CTGCCGCGGCC---GGTATGATGGGTAAACCATTGACTGCTGCCAACGTTGAGAAAATGC 92334 Query 280669 TGACCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTG 280728 | | | || || || || | ||||| |||| ||||||| ||| || |||||||| | Sbjct 92335 TCGGCGATCTCGGACTCGAGTCTGAGTTCGCAACACACTCTCACATCCGTGGTCTTTCCG 92394 Query 280729 GAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCG 280788 |||| ||||||||||| ||||| ||||||| || |||||||||| || || | |||| Sbjct 92395 GAGGTCAGAAGGTCAAGCTTGTGCTCGGAGCTGCCATGTGGCAACAGCCACATATCATCG 92454 Query 280789 TTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTGAGTGCTGCTC 280848 | || || |||||||| ||||| || || || || ||| || || || ||| |||| Sbjct 92455 TCCTGGATGAGCCTACAAACTACCTTGATCGTGAATCCCTCGGTGCCATGTCTGCCGCTC 92514 Query 280849 TGGACACATTTGGCGGCGGCGTCGTAGTCATTTCTCACAGCACAGAATTTGTCAAGTCTG 280908 | | || || || || || || || |||||||| | ||| || | | | | Sbjct 92515 TCAAGGAGTTCGGTGGAGGTGTTGTCGTTGTTTCTCACTCCCAAGAGTTCTTGGACACCG 92574 Query 280909 TGTGCTCCGAGATGTGGACAGTGGGGGGAGGCAAGGTTGACATCACAGGTCAGTCTGCAG 280968 | ||| |||| ||||| || || ||||| ||| | || ||||| ||||||||||| | Sbjct 92575 TATGCGGTGAGACATGGACTGTTGGAGGAGGAAAGCTCGAGATCACCGGTCAGTCTGCCG 92634 Query 280969 CCACCCTAGAGGCGGCCAAGATCGAGCTCAAGCGGGAGACCGAGTACACTGATGCTCTTG 281028 | | || | || |||||| ||||| ||| || || ||| ||||||||| |||| Sbjct 92635 CTGCACTCGCCGCTGCCAAGCTCGAGTGGAAGAGGCAGGAAGAGACCACTGATGCCCTTG 92694 Query 281029 GTAACACCCACAAGGTAAAGGAAGAGAAGCGGGAGCTGACTCGTCAAGAAAAGAAGCA 281086 | |||||| |||| | |||| | ||| ||| ||| ||||| | || |||||||| Sbjct 92695 GAAACACCATCAAGATTAAGGGACCAAAGAAGGAACTGTCTCGTAAGGAGAAGAAGCA 92752 >seq795 Length=365650 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 279693 CCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTA 279752 ||| | | ||| |||| || || |||| |||||||| ||||| | || ||||| | Sbjct 248017 CCAATTGCTTCATTGTCTGGAGGATGGAGAATGAAGCTCGCCCTTGCCCGAGCCATGTTG 247958 Query 279753 CTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTA 279812 | |||| ||| | || ||||| |||||||| || || ||||||||||| |||||||| Sbjct 247957 ATTGGTGCTGATATTCTTCTGCTGGATGAGCCCACAAATCACATGGACACAACCAACGTG 247898 Query 279813 GCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 || ||| |||| |||||| |||| || | || | || || | ||||| || ||| Sbjct 247897 GCTTGGTTAGTTGACTACCTGACCAAAAAGACGGATATCTCATCAATGATTGTTTCACAC 247838 Query 279873 GACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG 279920 || ||||| ||| | |||| || ||| ||| || ||||| |||||| Sbjct 247837 GATTCTGGATTCTTGGATGATGTTTGCACTGATATTATTCATTATGAG 247790 >seq232 Length=44964 Score = 109 bits (120), Expect = 1e-18 Identities = 379/577 (66%), Gaps = 22/577 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||||||||| | ||| |||| || ||| || || ||||| | ||||| || || | Sbjct 12029 TCGAAGAAATTTGTCTTTCCCTGCAAAGAAATCAGTTCCATCCAATCGAATGGATTGGCA 11970 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 |||||||| |||| || || || || || | | | || || ||||| || | Sbjct 11969 ACATTGTACACCTTGTCATTCCCCAGGGCAACCAGAAGTCTATCAGCTACAAATTCAATG 11910 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 |||||| ||| || | ||||||||| |||| ||||| || | || || || || Sbjct 11909 TACTGTGACATGAGCCTCGCGTTCATGCCGATCAGGTCGACA-GGCAGGGCGTCGCAAAT 11851 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT---TGCC-TTCACCTGTGCCAGAG 251797 || ||||| || |||| || | | ||| || ||| ||| | | | ||| Sbjct 11850 AAACTCCTTCTCTAATTCAACGGCGTTCGTCACGATATCTGCGATTCTCTCCTTGCTGAG 11791 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCTC 251855 |||||| | ||| ||||| | ||| | || ||| |||| ||| || ||||| Sbjct 11790 ----CTTGTTGTTGAGCAAGGAGTAGATGAGGCATGCAAAATCTGT--GTGGAGCCCCTC 11737 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 || ||| ||| ||||||||||| | || || || | || ||| || || |||| Sbjct 11736 ATCACGAGAGATCAACTCGTTGGAGAATGTCAATCCTGGAAGCAGCCCTCGCTTTTTGAG 11677 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 |||| | || || || |||||||| ||||| | | || || || || | ||||||| Sbjct 11676 CCAGTAAATGGCACAGAAGGATCCGGAGAAGAAAATTCCTTCAACGCAGGCGAATGCAAC 11617 Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGA--CAA--GAACTTCTGTGCCCATGCTGCCT 252031 | ||||| || || || | | ||| || ||| | || || ||||| |||||| Sbjct 11616 CAATCGCTCTGCGAAAGAATCG--CTG-GACTCAATCCATCTCATG-GCCCAATCTGCCT 11561 Query 252032 TCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGT 252091 |||| ||| | || | ||| ||||| |||| || || |||| || || | Sbjct 11560 TCTTCTTCACCACTGGTACTGTCTCGATGGCATGGAACAGCTTGTTCTTTTCAACAGGAT 11501 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTC 252128 ||| |||| | |||||||||||| |||||||| Sbjct 11500 CCTTGATGTATGTCTCAAGCAGGAGACTATACATCTC 11464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027825211140080