Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq232 150 3e-31 >seq232 Length=44964 Score = 150 bits (166), Expect = 3e-31 Identities = 476/728 (65%), Gaps = 16/728 (2%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || | | || |||||| |||||||||||||| || ||| |||||| || Sbjct 11196 GATCAAGTATAATGAAATCTGGGAAATGTACAAGAAGGCAGAGGCTTCCTTCTGGACAGC 11255 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGC--TGGGAGTCACTGTCTGAGAACGAA 42401 || ||| |||| |||| |||| || | || ||||| | || ||| ||||| Sbjct 11256 TGAAGAGGTTGATCTGGG--AGGAGACATCAAGCACTGGGAAGGATTGAATGACAACGAG 11313 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 | |||| || | | || || ||||| || || ||||| ||||| || |||||| Sbjct 11314 AGACATTTCATCTCTCATGTGCTTGCATTCTTTGCTGCATCTGATGGCATCGTAAATGAG 11373 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGC--GCGCTGCTTCTACG 42519 || ||| | || |||| ||||||||| | ||||| | ||| || || | Sbjct 11374 AATTTGGGGGTACGATTTTTGAAGGAGGTGCAGATCCCAGAGGCCAGAGCT--TTTTATG 11431 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGT 42579 | ||||| || ||||| ||||| | || ||| |||| ||||| | || | Sbjct 11432 GATTCCAAATCGCCATTGAGAATATTCATAGCGAGATGTATAGTCTCCTGCTTGAGACAT 11491 Query 42580 ACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA 42639 ||||| |||||| || || ||| ||||||| | ||||| ||||| | || Sbjct 11492 ACATCAAGGATCCTGTTGAAAAGAACAAGCTGTTCCATGCCATCGAGACAGTACCAGTGG 11551 Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCG 42699 | ||||||||||| || ||||| | | ||||| |||||| | || | |||| | Sbjct 11552 TGAAGAAGAAGGCAGATTGGGCCATGAGATGGAT--TGAGTCCAG-CGATTCTTTCGCAG 11608 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 || | |||| || || || ||| || || || |||||||| || ||||| ||| Sbjct 11609 AGCGATTGGTTGCATTCGCCTGCGTTGAAGGAATTTTCTTCTCCGGATCCTTCTGTGCCA 11668 Query 42760 TCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 | | ||||||||| || | | | | || ||| | || ||||| ||||| | ||| Sbjct 11669 TTTACTGGCTCAAAAAGCGAGGGCTGCTTCCAGGATTGACATTCTCCAACGAGTTGATCT 11728 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC 42879 | || |||||||| || | || ||||| |||||| | | ||| | |||| Sbjct 11729 CTCGTGATGAGGGGCTCCACACAGATTTTGCATGCCTCATCTACTC---CTTGCTCAACA 11785 Query 42880 ACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 |||||| | |||||| | || | ||| | ||| | ||||| || | ||||||| Sbjct 11786 ACAAGCTCAGCAAGGAGAGAATCGCAGATATCGTGACGAACGCCGTTGAATTAGAGAAGG 11845 Query 42940 AGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGA-CCTCATGTGC 42998 |||| | | | ||||| || |||| |||||||||| | ||| ||||||| Sbjct 11846 AGTTTATTTGCGACGCCCTGCCTGTCGACCTGATCGGCATGAA-CGCGAGGCTCATGTCA 11904 Query 42999 AAGTACAT 43006 ||||||| Sbjct 11905 CAGTACAT 11912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944328812268800