Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq157 104 2e-17 seq221 102 6e-17 seq354 87.8 1e-12 >seq157 Length=134730 Score = 104 bits (114), Expect = 2e-17 Identities = 168/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 37874 GGGTAAGATGCATCAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGA 37933 |||||| |||||| | |||||||||||||| |||||| ||| |||||||| | || Sbjct 46218 GGGTAAAATGCATGGATTCCTGCGCATGTATTGGGCCAAGAAGATTCTGGAATGGACAGA 46159 Query 37934 TGATGCTCAGACCGCGC--TCAACTACGCCATTTATCTCAATGATAAGTA-CAGCTTGGA 37990 || | |||| | || | |||| | ||| | || || || | ||| ||||| Sbjct 46158 --ATCCCCAGAGCAAGCAATAGACTATGGCATCAGGTTGAACGACAAATGGCAG-TTGGA 46102 Query 37991 CGGGCGTGATCCCAACGGTTACGTCGGCTGTTTGTGGTCTATATGCGGGCTACACGATAG 38050 ||||||||||| || || || || || ||||||| || ||||| | || ||| Sbjct 46101 TGGGCGTGATCCAAATGGCTATGTGGGTATCATGTGGTCCATGTGCGGAATCCATGATCA 46042 Query 38051 AGCCTGGCGCGAGATTCCCATTTACGGCAAGATTCGGTACATGAACTACAACGGATG 38107 | |||||||| | ||||||| ||| |||||||| ||||||||||| | ||||| Sbjct 46041 GGGATGGCGCGAAAGACCCATTTTCGGGAAGATTCGTTACATGAACTATCAAGGATG 45985 >seq221 Length=83180 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || ||| ||||||| || || || |||||||||||| |||||||||||| Sbjct 43850 CCTCCACGCAACCGAAGCACCAAGTGCAGTGTAGACTCCTTCTGAATATTGTAATCTGCC 43909 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| ||| | || || | ||||| || || || ||||| | ||||||||| ||| Sbjct 43910 AATGTACGCCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGTCTCTGCTGATCAGGCGGG 43969 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCA 34079 | | ||| || ||| |||||| ||| | |||| | |||| | ||| ||| Sbjct 43970 ATCCCCTCCTTATCCTGAATTTTCGACTTGA-CATTCTCAATCGTATCTGAAGACTCGAC 44028 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| ||||| || || || || |||||||| || || || ||||| Sbjct 44029 CTCGAGGGTTATGGTCTTCCCAGTCAGTGTTTTGACGAAAATCTGCAT 44076 >seq354 Length=2136 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||||| || ||||||| || | || ||||||||| ||||||||||||||| Sbjct 1936 CCTCCTCTCAAGCGAAGCACCAAGTGCAATGTAGACTCCTTCTGGATGTTGTAATCTGCC 1995 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| | || || | |||||||| ||||| || || ||||||||||| Sbjct 1996 AACGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATC 2048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397058141505760