Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq429 123 6e-23 seq221 105 2e-17 seq556 102 2e-16 seq814 96.9 8e-15 >seq429 Length=364352 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| ||||| || || || ||||| || ||||| || || ||||| ||||| Sbjct 147002 TCCTTTTGGATGTTATAATCCGCCAGGGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAA 146943 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| ||| | |||||| || ||||||||||| || |||| || || || Sbjct 146942 ATCAATCTCTGCTGATCAGGTGGGATCCCCTCTTTATCCTGAATCTTCGACTTGACATTC 146883 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || |||||||| || || || || || || ||||| || || ||| Sbjct 146882 TCAATCGTATCAGATGACTCTACTTCCAGAGTAATAGTTTTTCCCGTCAGGGTTTTAACG 146823 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 146822 AAAATCTGCAT 146812 >seq221 Length=83180 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||| || || || | || || || || || | || || || |||||| Sbjct 43886 TCCTTCTGAATATTGTAATCTGCCAATGTACGCCCATCCTCAAGCTGCTTCCCAGCGAAG 43945 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| ||| | ||||| || || |||||||| ||||||| || || || Sbjct 43946 ATCAGTCTCTGCTGATCAGGCGGGATCCCCTCCTTATCCTGAATTTTCGACTTGACATTC 44005 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || ||||| || || |||||||| ||||| || |||||| Sbjct 44006 TCAATCGTATCTGAAGACTCGACCTCGAGGGTTATGGTCTTCCCAGTCAGTGTTTTGACG 44065 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 44066 AAAATCTGCAT 44076 >seq556 Length=75407 Score = 102 bits (112), Expect = 2e-16 Identities = 248/370 (67%), Gaps = 12/370 (3%) Strand=Plus/Minus Query 325966 GATAGGCGTGATGAACTTCTTCAAGAAC-CCTGGAATTTCTAGAAGATTAGGGAAACAGC 326024 ||| || |||||||| ||| ||||| |||||||||| || ||| || | || Sbjct 29971 GATTGGAGTGATGAA-TTCGATAAGAAAGCCTGGAATTTTCAGCAGAGATGGATAGAAGT 29913 Query 326025 TATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCA 326084 || || || ||||||| || || |||||||| ||| || |||| || |||| Sbjct 29912 GGTGCAAGAAATTCATGATAAGTCCCTTAATGTGAGATCCATCGTGATCCTGATCCGTCA 29853 Query 326085 TGATCATCACATGACCGTAACGAAGCGAGGACGTG---TCTTTGTACACTTTACCGGTTT 326141 ||||||||| || || || || || |||| || || | || || || || | Sbjct 29852 TGATCATCAAGTGCCCATATCGCAG---GGACTTGACATCCTCATAGACCTTTCCATGCT 29796 Query 326142 GAAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACGG 326201 | || || | ||| || |||| |||||||| |||| ||||| ||| | | Sbjct 29795 GGAGCCCCAAAATCTGCTTGATATTGTTGATTTCTGCGTTGCCAGTGAT--TTGACTAGC 29738 Query 326202 A--TGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCG 326259 | ||||| || || |||| | |||||| ||||| ||||| ||||| |||| || | Sbjct 29737 ACTGGCATCTCGAACATTCAGCAATTTTCCTCGAAGTGGGAAGACTCCGTATCGATCTCT 29678 Query 326260 ACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAAT 326319 || || || |||| || ||| || | || | ||| ||||| ||||| ||||| || Sbjct 29677 TCCAACAACTGACAAACCACTGATGGCCAATGACTTTGCAGAATCTCCCTCTGTCAGGAT 29618 Query 326320 GAGAGTGCAC 326329 ||| |||||| Sbjct 29617 GAGTGTGCAC 29608 >seq814 Length=161544 Score = 96.9 bits (106), Expect = 8e-15 Identities = 268/400 (67%), Gaps = 16/400 (4%) Strand=Plus/Minus Query 72429 TCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCT 72488 || ||| ||| |||||| ||||| || ||||| || | || | || || || ||||| Sbjct 132613 TCTGAGCTGTTTGGAAAGGTGCAGGAGATTCCCCAAAAGGTGACCACACCTTTCTATCCA 132554 Query 72489 CGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAG 72548 || || || | | |||||| ||| || || |||||| || || | ||| Sbjct 132553 CGTTCGCCATATGCGGCAGCAAAGCTGTTCGGGTACTGGATCACCGTCAACTATAGAGAG 132494 Query 72549 TCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAAC--AGAG 72606 ||||| |||| || ||||| || ||||| |||||| |||| | |||| Sbjct 132493 TCGTACGGTATGTTTGCCTGCAATGGTATCCTGTTCAACCACGAG--TCCCCTCTGAGAG 132436 Query 72607 GCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAATGGTG--T 72664 | | || ||||| | || ||||| | | |||| | | | |||| | || | Sbjct 132435 GTGAGACATTTGTGACAAGGAAGATCAC--ACGAGGTCTGGCA-AGGATCAAGGCTGGTT 132379 Query 72665 CGAAAAATGCA-TGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGG 72723 | | ||||| |||| | || ||| | ||||| || ||||||||||| ||||||||| Sbjct 132378 TGGATGATGCACTGTACTTGGGAAATCTCGATGCGAAGAGAGATTGGGGGCATGCGAAGG 132319 Query 72724 ATTACGT--AGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGAT 72781 ||||||| ||| ||| |||| ||||||| || || ||| || | || |||||||| Sbjct 132318 ATTACGTCGAGATGCA--GTGGCTGATGCTCCAGCAGGATGAACCAAAGGATTATGTGAT 132261 Query 72782 TGCAACAGGGAAAACAAC-GAGCGTTCGTGAGTTCGTGAA 72820 |||||| ||| | || | || |||||||| || || || Sbjct 132260 TGCAAC-TGGAGAGCAGCACAGTGTTCGTGAATTTGTCAA 132222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179641099396640