Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq661 250 5e-61 seq232 109 1e-18 seq556 105 1e-17 seq814 96.9 8e-15 >seq661 Length=126702 Score = 250 bits (276), Expect = 5e-61 Identities = 1149/1797 (64%), Gaps = 78/1797 (4%) Strand=Plus/Minus Query 332603 CTTCTTTTTCTCCTGACGACTCAGTTCACGCTTTTCTTCCTTAATCTTGATTGTATTTCC 332662 || ||| ||||||| |||| |||||| |||| | ||||||||||||| || ||||| Sbjct 92753 CTGCTTCTTCTCCTTACGAGACAGTTCCTTCTTTGGTCCCTTAATCTTGATGGTGTTTCC 92694 Query 332663 AAGAGCATCCGTGTATTCAGTTTCCT---TCTTGAGTTCCAGCTTGATCGCGTCGAGCAT 332719 ||| ||||| ||| || ||||| |||| || |||||| ||| |||| Sbjct 92693 AAGGGCATCAGTGGTCTC---TTCCTGCCTCTTCCACTCGAGCTTGGCAGCGGCGAGTGC 92637 Query 332720 CGCAGCAGATTGCCCAGTAATATGGACAACGCCACCATCAACAGTCCAGTTCTCGATACA 332779 || ||||| || || || || | || || || |||||||||| |||| || Sbjct 92636 AGCGGCAGACTGACCGGTGATCTCGAGCTTTCCTCCTCCAACAGTCCATGTCTCACCGCA 92577 Query 332780 TACATTTTTAACAAATTCGTTGCTATGACTAATGATCACGACACCTCCACCAAAGTTCTT 332839 ||| | | | || || | | ||| || | || ||||||||||| || | ||| Sbjct 92576 TACGGTGTCCAAGAACTCTTGGGAGTGAGAAACAACGACAACACCTCCACCGAACTCCTT 92517 Query 332840 AAGTGCTTCGGCCATTGCTCCGAGACTCTCACGGTCAACGAAGTTGGTCGGTTCGTCCAA 332899 || || | | ||| || ||||| ||||| |||| | |||| || || || |||| Sbjct 92516 GAGAGCGGCAGACATGGCACCGAGGGATTCACGATCAAGGTAGTTTGTAGGCTCATCCAG 92457 Query 332900 AACGATCACGTGGGGTTGTTGCCATAGAGCAGCGCCGATAACCAATTTCAGCTTTTGCCC 332959 ||||| | || || |||||||| | ||||| |||| || | || | ||| || || Sbjct 92456 GACGATGATATGTGGCTGTTGCCACATGGCAGCTCCGAGCACAAGCTTGACCTTCTGACC 92397 Query 332960 GCCAGATAGACCACGAATGCGAGAATGAGTTGTAAATTCAGGGTCGAGACCAACATTTGC 333019 || || |||||||| ||| |||| || |||| || |||| ||||| || | || | Sbjct 92396 TCCGGAAAGACCACGGATGTGAGAGTGTGTTGCGAACTCAGACTCGAGTCCGAGATCGCC 92337 Query 333020 CA-TATGTTCTTCCACGTTCTTTGCGGTCAGTGGCTT---GAACATACCGTTTGCGACGG 333075 | || ||| || ||||| || |||| ||| || | ||||||| ||| | | Sbjct 92336 GAGCATTTTC-TCAACGTTGGCAGCAGTCAATGGTTTACCCATCATACCGGCCGCGGCAG 92278 Query 333076 CTTCTTTGGTGTCAATGTCGTTCAGAAGTTTTCCGAAACCATACTCCTCGAGGCGTTCGC 333135 | ||| ||| ||||| ||||| | | || || |||| ||| ||||| | | | Sbjct 92277 CCTCTCTGGCATCAATCTCGTTAACCATCTTCTCGTAACCCATCTCTTCGAGCTGAGCAC 92218 Query 333136 GAGATATCCATTGGGT-AGTCTCA------TCGTTTTTCCACTGAACCTCGTACTCGTAA 333188 | | | ||| ||| ||| || | || | ||||| |||||||||||||||| Sbjct 92217 GGGTCAACCAAGAGGTCTGTC-CAGCTGGGGCATTCTGCCACTCAACCTCGTACTCGTAA 92159 Query 333189 GATTTTTTCAGCTTGCGGCGACCAAGAATCTTGTCAAGAATTTTCTTCACTCCGTCAACG 333248 || |||||||| ||||| |||| ||| |||| | ||| || || | Sbjct 92158 CCCTTCTTCAGCTTACGGCGGTTGAGAAGCTTCTCAACAGAGCGCTTGACACCCT----- 92104 Query 333249 ACTTTAGTGTCATACATCTTCT-TTAGTTCTTCTTCG-TTGTTCTTCCTAG---AAACGA 333303 || ||| | || ||||| || || ||| | | |||||||| | |||||| Sbjct 92103 -GTTCGGTGGC---CACCTTCTGTTCCTTGAGCTTGGCCTCTTCTTCCTCGGTCAAACGA 92048 Query 333304 CGTCAA---------GGGTCTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACT 333354 |||| ||| ||| |||| || |||| || |||||||| || || |||| Sbjct 92047 --TCAACCTTGCTCTGGGCTTCTCTGTCCTCTCCGGTAGCGTAACGCCACTGAATGTACT 91990 Query 333355 GGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAG 333414 |||| || ||| | || | |||| ||| || || |||||||| ||||| || || || | Sbjct 91989 GGTTTGGAGTCTTATCCAAATGACTCTCAATATGATGGAAAGCGTGCTGGGCAACATATG 91930 Query 333415 CAAGACGCATATTTGGATGCTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGA 333474 | | ||||| || || |||||||| ||| ||| | | | |||| | || |||| Sbjct 91929 CTACACGCAAGTTAGGGTGCTTCCACACAAATCCATCATTTGGCTCCAACTCTCCAGTGA 91870 Query 333475 GCACCTTAATGAGAGTGCTTTTTCCCGCACCATTTTCGCCTACCACA-CCAATCCTGGAG 333533 | | || || | || || || || || ||| | | | |||| ||| | |||| Sbjct 91869 GAAGTTTGATCATGGTAGACTTACCAGCTCC-GTTTGGTCCAACACAGGCAACACGGGAG 91811 Query 333534 TTCAGCGATACCTGGGCATTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTG 333593 || || || |||||| | |||| | | || || || || || ||||| Sbjct 91810 TTGAGAGACACCTGGAGTGTGACGTCATTGAGAATCTTCTTGTCAGTTCCTGGATAACCA 91751 Query 333594 AACCCCACACCGCGTAGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAAC 333653 || ||| || | | ||| | ||| || | |||||| || | || ||||| ||||| Sbjct 91750 AAGTGCACTCCTCTCATCTTGAGGATAGCTCTGTCCTTGGAGTTAATGCCCTCAAGGAAT 91691 Query 333654 CCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTA--ACTCGCTG 333711 || ||||| || | |||| |||||| | || | |||||| ||| | | Sbjct 91690 CCTGGCTCTGGAAGGACCCACTTGGTCTGAGCATCCTCCAAATTGTAGTAGGACTTG--G 91633 Query 333712 ATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGT 333771 || || | | ||| || | || | || ||||| |||||| | ||| | Sbjct 91632 CCTCTGGTCTGTGCTTGACAAGTTCAGCCAAGTTTCCACGGTACTTGCGGATCTT---GC 91576 Query 333772 TAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACA 333831 || ||||| |||||| ||||| || ||| | ||| || |||||||| |||| Sbjct 91575 GTCCCTCATAATGAATAATACCAGTGCACACCTTGTCCAAGAATCCAGAGTCGTGCGACA 91516 Query 333832 CAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAG 333891 |||| || | | |||||| | ||| | ||||| |||| || |||| ||||| | Sbjct 91515 CAATGACAGATGTCACGTCCGTCAGGGATGTGAGGTAGTCAACCAACCACTGAACGTTGG 91456 Query 333892 ACACAGAAAGATGGTTGGTCGGCTCGT-CAAGAA-GTAGTAGCTTTGCGTTCAGGAGCAT 333949 || ||||||||| || ||||| | ||| || || || | || |||| | ||| Sbjct 91455 TAACGTCAAGATGGTTTGTAGGCTCATCCAACAACATAATA--TCAGCCTTCATCAACAT 91398 Query 333950 TGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGA 334009 ||||| || | ||| || ||||| ||||| ||||| || |||| | ||| Sbjct 91397 AGCACGGGCCAAAGCAAGCTTCATCTTCCATCCTCCAGAGAGAG------CAGCCACAGC 91344 Query 334010 TTGGCGCTCAATATC------AAAGCCAACCGATTCTAGAGTAGTTACGA--TCTTTTCA 334061 | || ||||| || ||||| || | || ||| || |||| Sbjct 91343 TCCATTCTGCATATCCTCGGAGAAACCAACGGAAGTCAAAGCAGTCTGGACTTCTTCCTT 91284 Query 334062 CGAGACCAAATGTTTTCCTTTAC--TTGT-TCATCATTGGCAATGAAGTCAATGATAGCC 334118 | |||| | | | || | || |||||||||| |||||||||| || || Sbjct 91283 GGTGACC--TTCTCATACTGAGCCAAAGTCTCATCATTGGTGATGAAGTCAACGACTGCA 91226 Query 334119 ATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCA 334178 | | || ||||| | |||| ||||| || || || |||| | | ||| Sbjct 91225 GTCTCAGCCTCGGAGGCATCGATGTCGTGCTCAACATACACAGTGCGGAGCTCTTCCTTT 91166 Query 334179 GAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCC 334238 | ||||| || || | ||| || || |||| || | ||||| || || || || Sbjct 91165 GGTGGGAATCCATCGACCTGTCCATTGGCAATGGCTCTCATCAATGTGGACTTTCCGCAT 91106 Query 334239 CCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCG-CGTATTGTT 334297 |||||||| ||||| ||||| || || | ||||||||||| | |||| | | ||| | Sbjct 91105 CCGTTTGGTCCACAGAGACCATAACGCTGTCCACGCTTCA-AGTGAAGGGTAGCATTCAT 91047 Query 334298 CAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 || ||| | || ||||||| || || || ||||| || | || ||||||||||| Sbjct 91046 CAAAAGCACCTTGGCACCATAAGCAAGGGAGAATTCGCAGTTGCAAAGATCCTCACC 90990 >seq232 Length=44964 Score = 109 bits (120), Expect = 1e-18 Identities = 361/556 (65%), Gaps = 4/556 (1%) Strand=Plus/Plus Query 243202 AACGAGCTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCT 243261 ||| |||| ||| | |||||||| | | || | ||| | || |||||| | ||||| Sbjct 11515 AACAAGCTGTTCCATGCCATCGAGACAGTACCAGTGGTGAAGAAGAAGGCAGATTGGGCC 11574 Query 243262 CAGAAGTGGCTAGAACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTT 243321 || ||| | || || | | || || || ||||| | || || | | |||||| Sbjct 11575 ATGAGATGGATTGAGTCCAGCGATTCTTTCGCAGAGCGATTGGTTGCATTCGCCTGCGTT 11634 Query 243322 GAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTG 243381 ||||| ||| | || ||||| ||||| ||||| | ||||| || ||| || Sbjct 11635 GAAGGAATTTTCTTCTCCGGATCCTTCTGTGCCATTTACTGGCTCAAAAAGCGAGGGCTG 11694 Query 243382 ATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAG 243441 | || || | | || |||||||| ||| ||| || ||||| || ||| | | Sbjct 11695 CTTCCAGGATTGACATTCTCCAACGAGTTGATCTCTCGTGATGAGGGGCTCCACACAGAT 11754 Query 243442 TTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCT-ACCATTCGAAACGGTCAAACA 243500 || | || || || || |||| | |||||||| | || || | || | | Sbjct 11755 TTTGCATGCCTCATCTACTCCTTGCTCAACAACAAGCTCAGCAAG-GAGAGAATCGCAGA 11813 Query 243501 AATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG 243560 ||| | || | || |||||| || ||||| || ||||||||||| | || || || Sbjct 11814 TATCGTGACGAACGCCGTTGAATTAGAGAAGGAGTTTATTTGCGACGCCCTGCC-TGTCG 11872 Query 243561 -GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCA 243619 || || ||||||||| | |||||| ||||||||| ||||| ||||| || | Sbjct 11873 ACCTGATCGGCATGAACGCGAGGCTCATGTCACAGTACATTGAATTTGTAGCTGATAGAC 11932 Query 243620 TTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGG 243679 || | | || || || |||| || |||||||| || || || | | |||| Sbjct 11933 TTCTGGTTGCCCTGGGGAATGACAAGGTGTACAATGTTGCCAATCCATTCGATTGGATGG 11992 Query 243680 AGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAAC 243739 | || ||||| | || || || || || |||||||| ||| | || | || || ||| Sbjct 11993 AACTGATTTCTTTGCAGGGAAAGACAAATTTCTTCGAGAAGAGAGTTGGCGAGTACCAAA 12052 Query 243740 GCCCTGGTGTGATGAA 243755 |||| |||||||| Sbjct 12053 AGGCTGGAGTGATGAA 12068 >seq556 Length=75407 Score = 105 bits (116), Expect = 1e-17 Identities = 249/370 (67%), Gaps = 12/370 (3%) Strand=Plus/Minus Query 298087 GATAGGCGTGATGAACTTCTTCAAGAAC-CCTGGAATTTCTAGAAGATTAGGGAAACAGC 298145 ||| || |||||||| ||| ||||| |||||||||| || ||| || | || Sbjct 29971 GATTGGAGTGATGAA-TTCGATAAGAAAGCCTGGAATTTTCAGCAGAGATGGATAGAAGT 29913 Query 298146 TATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCA 298205 || || || ||||||| || || |||||||| ||| || |||| || |||| Sbjct 29912 GGTGCAAGAAATTCATGATAAGTCCCTTAATGTGAGATCCATCGTGATCCTGATCCGTCA 29853 Query 298206 TGATCATCACATGACCGTAACGAAGCGAGGACGTG---TCTTTGTACACTTTACCGGTTT 298262 ||||||||| || || || || || |||| || || | || || || || | Sbjct 29852 TGATCATCAAGTGCCCATATCGCAG---GGACTTGACATCCTCATAGACCTTTCCATGCT 29796 Query 298263 GAAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACGG 298322 | || || | ||| || |||| |||||||| |||| ||||| ||| | | Sbjct 29795 GGAGCCCCAAAATCTGCTTGATATTGTTGATTTCTGCGTTGCCAGTGAT--TTGACTAGC 29738 Query 298323 A--TGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCG 298380 | ||||| || ||||||| | |||||| ||||| ||||| ||||| |||| || | Sbjct 29737 ACTGGCATCTCGAACATTCAGCAATTTTCCTCGAAGTGGGAAGACTCCGTATCGATCTCT 29678 Query 298381 ACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAAT 298440 || || || |||| || ||| || | || | ||| ||||| ||||| ||||| || Sbjct 29677 TCCAACAACTGACAAACCACTGATGGCCAATGACTTTGCAGAATCTCCCTCTGTCAGGAT 29618 Query 298441 GAGAGTGCAC 298450 ||| |||||| Sbjct 29617 GAGTGTGCAC 29608 >seq814 Length=161544 Score = 96.9 bits (106), Expect = 8e-15 Identities = 268/400 (67%), Gaps = 16/400 (4%) Strand=Plus/Minus Query 68418 TCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCT 68477 || ||| ||| |||||| ||||| || ||||| || | || | || || || ||||| Sbjct 132613 TCTGAGCTGTTTGGAAAGGTGCAGGAGATTCCCCAAAAGGTGACCACACCTTTCTATCCA 132554 Query 68478 CGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAG 68537 || || || | | |||||| ||| || || |||||| || || | ||| Sbjct 132553 CGTTCGCCATATGCGGCAGCAAAGCTGTTCGGGTACTGGATCACCGTCAACTATAGAGAG 132494 Query 68538 TCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAAC--AGAG 68595 ||||| |||| || ||||| || ||||| |||||| |||| | |||| Sbjct 132493 TCGTACGGTATGTTTGCCTGCAATGGTATCCTGTTCAACCACGAG--TCCCCTCTGAGAG 132436 Query 68596 GCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAATGGTG--T 68653 | | || ||||| | || ||||| | | |||| | | | |||| | || | Sbjct 132435 GTGAGACATTTGTGACAAGGAAGATCAC--ACGAGGTCTGGCA-AGGATCAAGGCTGGTT 132379 Query 68654 CGAAAAATGCA-TGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGG 68712 | | ||||| |||| | || ||| | ||||| || ||||||||||| ||||||||| Sbjct 132378 TGGATGATGCACTGTACTTGGGAAATCTCGATGCGAAGAGAGATTGGGGGCATGCGAAGG 132319 Query 68713 ATTACGT--AGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGAT 68770 ||||||| ||| ||| |||| ||||||| || || ||| || | || |||||||| Sbjct 132318 ATTACGTCGAGATGCA--GTGGCTGATGCTCCAGCAGGATGAACCAAAGGATTATGTGAT 132261 Query 68771 TGCAACAGGGAAAACAAC-GAGCGTTCGTGAGTTCGTGAA 68809 |||||| ||| | || | || |||||||| || || || Sbjct 132260 TGCAAC-TGGAGAGCAGCACAGTGTTCGTGAATTTGTCAA 132222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102867565028000