Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq556 172 7e-38 seq457 150 2e-31 seq3 100 3e-16 seq600 86.0 7e-12 >seq556 Length=75407 Score = 172 bits (190), Expect = 7e-38 Identities = 385/568 (68%), Gaps = 34/568 (6%) Strand=Plus/Minus Query 172409 GCTTCGGCCGATGTTGAAGTACCGAGACCCTTGTAGTACTTGATTTTCCATCCC-----G 172463 ||||| ||| || || ||||| ||||| || ||||||||||| |||||||| | Sbjct 30108 GCTTCTACCGCAGTGGATGTACCCAGACCTTTATAGTACTTGATCTTCCATCCTTTTGTG 30049 Query 172464 GTTGTCCATTGCCATACCAGCTACGGAAAGCCGA--ATCGGTATAGAAAGACTTTGACTG 172521 ||||| | | || ||| | | | | || || ||| ||||||| | |||| Sbjct 30048 TTTGTCGAGTCCCT--CCAATT-CTCATACTCGGGCAT-GGTGAAGAAAGAAATAGACTC 29993 Query 172522 CGTACCCTTGGAAGCCTTGATGATTGGTGTCACCATTGAGACCACAAACCCC---AACTT 172578 | | ||||| | ||||||||||||||| || | | | || | ||| || | || Sbjct 29992 CTTGCCCTTTGTAGCCTTGATGATTGGAGTGATGAATTCGATAAGAAAGCCTGGAATTTT 29933 Query 172579 GAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGAACC 172638 || || ||||| |||||| ||| | | ||||| ||| || ||||||||||| || || Sbjct 29932 CAGCAGAGATGGATAGAAGTGGTGCAAGAAATTCATGATAAGTCCCTTAATGTGAGATCC 29873 Query 172639 ATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGA---AACATC 172695 ||||| |||| ||||||||| ||||| | | ||||| || || ||| ||||| Sbjct 29872 ATCGTGATCCTGATCCGTCATGATCATCAAGTGCCCATATCGCAG---GGACTTGACATC 29816 Query 172696 TTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTT 172755 | ||| |||| || || || || ||||| |||| ||||| || |||| ||| ||| Sbjct 29815 CTCATAGACCTTTCCATGCTGGAGCCCCAAAATCTGCTTGATATTGTTGATTTCTGCGTT 29756 Query 172756 -----TGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGA 172810 |||| ||| | | ||||| ||||| || ||||| | || || || || Sbjct 29755 GCCAGTGATTTGACTAG---CACTG--GCATCTCGAACATTCAGCAATTTTCCTCGAAGT 29701 Query 172811 GGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTC 172870 ||||| || ||||| |||| | ||||| || || | |||| | || | | ||| Sbjct 29700 GGGAAGACTCCGTATCGATCTCTTCCAACAACTGACAAACCACTGATGGCCAATGACTTT 29641 Query 172871 GCGGAATCACCCTCCGTCACGATGAGCGT--ACACTTTCCAGATTGTGCCGTCCCCGCCT 172928 || ||||| ||||| |||| |||||| || || ||||| | || | || ||||| | Sbjct 29640 GCAGAATCTCCCTCTGTCAGGATGAGTGTGCACTCTTTCGAATTTCTTCC--TCCCGCAT 29583 Query 172929 TGTTCGCATCGTCCAACTTGGGAATACC 172956 || ||||| ||||| || || ||||| Sbjct 29582 CATTTGCATCATCCAATTTTGGGATACC 29555 Score = 109 bits (120), Expect = 7e-19 Identities = 209/308 (68%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 171907 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATT 171966 |||||| || || ||||| || ||||| ||||| || |||| ||||| || Sbjct 30598 ATCTTTCCCTCCTTGAAGACGAGTACCAAACTGACCTTGTGGAACAAGAGTGTTGATGTT 30539 Query 171967 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACC 172026 |||||| || | ||| | |||| |||||| ||| |||||| || || Sbjct 30538 GTTTGACCCAACAAAGTTCTGAGCCAGGCCGACAATGGTAGAGCAAAGGGAGTTCTCGCC 30479 Query 172027 GTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCATC 172086 ||||| || || || | || ||||||||| | ||||| ||||||||||| || || Sbjct 30478 ATGATGATATGCAGAATGCTCGGCGACATACCCAGCCAATTGTGCCACCTTGATATCCGA 30419 Query 172087 CTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 172146 |||||| || | | ||| || |||||||||| ||| |||||| ||| || || ||||| Sbjct 30418 CTTGAGATTTCTTTTGAAACAAGCATACATGATCTTCCTCTGTCCAGGTTTCAGCCCGTC 30359 Query 172147 GGCCATGTGCGCGATGGAACGCTTCAAGTCTGCCAAGCTGAAATTGACCAAGTCTTTGCG 172206 |||| | ||| || |||| || ||| || ||| | ||| |||||| | Sbjct 30358 CATGATGTTTGGGATCGAGCGCTCCAGGTCAGCTCGTGAGAAGAGAATCAACTCTTTGTG 30299 Query 172207 AACAAAGT 172214 |||||||| Sbjct 30298 AACAAAGT 30291 >seq457 Length=513114 Score = 150 bits (166), Expect = 2e-31 Identities = 591/925 (64%), Gaps = 17/925 (2%) Strand=Plus/Plus Query 114470 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 114529 || || || || || || ||||| | || |||||| |||||||| || ||||| Sbjct 208491 GCAATGGATGCAAGGTTGCACACTGCAGTTTCATCCGGGCTTGTGTACTCAATGATTTCA 208550 Query 114530 GTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 114587 || ||||| || || | | |||| ||||||||||||| |||||| |||||| |||| Sbjct 208551 GTGCACAAGTTACTGGATT--TAATTGTGCCCAAGTTCTGTTGATTAGACTTTCTGTTGG 208608 Query 114588 ACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 114647 | ||||||| | |||||||| || | |||||||| ||| | | ||| || || Sbjct 208609 CAGAATCCTTGAAGAGCATGTAAGGATTTCCCGTCTCAACTTGAGCTTCGAGGATGGCAA 208668 Query 114648 TCCAGACATCGGCGGCTGGCACAG--TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTT 114702 ||| | || | ||| | ||| || || || ||||| || || || Sbjct 208669 ACCAAA-----GCTGTTGGGCCTTGATGGACTTACGAGCACGTCCCTCGCGTTCATATTT 208723 Query 114703 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 114762 || | ||||||| | ||| ||| | || | || || || || | || ||| Sbjct 208724 CAAATATAATTCTTCAAATTGTTCTCCCCAGCAGTCGGCAAGACCAGGGGCTTCATTTGG 208783 Query 114763 GCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCA 114822 || || | ||||| | || || | ||||| | | ||| ||||| ||||||||||| Sbjct 208784 ACAAAACAAGGACCACTCTCCTCCAGCTTCAACCCTTTGCATAAAGAGATCTGGGATCCA 208843 Query 114823 GAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 114882 | | |||| | ||| | | |||||||| | || ||||| | ||| || Sbjct 208844 CAACCCGTAGAACAAATCTCTTGCCCTCGCTTCTTCTTTGCCGTGATTCTTCCTCAATTC 208903 Query 114883 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC- 114941 | |||| | ||||| |||||||| || |||| ||||| || | | || || | Sbjct 208904 AAGCCAGTCGAAAATATCAGCGTGCCAAGGCTCCAAGTACATGGCAAACGCTCCTTTTCT 208963 Query 114942 --GACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAAT 114999 | || |||| | ||||| || || ||| |||| || || || ||||| || | Sbjct 208964 CTTCCCCCCTCCCTGATCAACATATCTGGCCGTGTCATTGAACACACGGAGCATAGGTAC 209023 Query 115000 GATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATG 115059 ||||||| || |||||||| || |||||| ||| | | ||||||| || ||| Sbjct 209024 AATACCATTCGAAGTTCCATTTGTTCCACGAATATAAGAACCAGTCGCTCTGATATTATG 209083 Query 115060 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCC 115119 || || ||| || |||||||| | ||| ||||| || |||||| | ||| || | Sbjct 209084 CATAGACAGACCGATGCCCCCTGCACTCTTGGAGATGCAAGCACACTCCTTCAGAGTGTC 209143 Query 115120 GTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGG 115179 || || || || || ||| ||| | ||| | ||||| || | || || Sbjct 209144 ATAAATGCCTTCAATACTATCATTCTTCATGCAGATCAAAAAGCACGAAGAAAGCTGAGG 209203 Query 115180 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACAT 115239 | ||| ||||| || ||||| || ||||| | || || ||||| | || |||| Sbjct 209204 GCGTGGAGTACCGGCATTGAACAGAGTTGGAGAGGCATGCGTGAACCATCTCTGAGACAG 209263 Query 115240 CTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCG 115299 | | ||| ||||| | | | || ||| | ||| ||| || || | || || | Sbjct 209264 CAGGTGGTATGTCTCAATGGCTGCATCAATATTCTCCTTGTGGATTCCAACTGAAACTCT 209323 Query 115300 CATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTT 115359 ||| | ||||| || || | |||| | ||||| || ||| | | || Sbjct 209324 CATGAGCATGTGCTGTGGCCTCTCCACGACACGACCATTGACCCTGAGCAAATATGAACG 209383 Query 115360 CTCCAAGGTCTTGAGACCAAAATAA 115384 ||||| || |||| |||||||||| Sbjct 209384 CTCCAGAGTTTTGAAACCAAAATAA 209408 Score = 118 bits (130), Expect = 1e-21 Identities = 348/534 (65%), Gaps = 2/534 (0%) Strand=Plus/Plus Query 113894 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 113953 ||||||| ||| || || ||||| || | ||| | ||| | ||| || || | Sbjct 207864 AGATGCTGATTCACCACTGTGAACTCTCCTGAGAGAACTCTTCTGACATAAATGTTTGAA 207923 Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 ||||||||||| |||||||||||||| || | || |||| || || ||||| ||||| Sbjct 207924 GTGTATGGCTCGAAGCACTCATTGTTCCCGAGAATCTGGGATGTTGATGCTGTTGGCATT 207983 Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG-TC 114072 ||||| | || | | ||| | || ||| | | |||| | || |||| | || Sbjct 207984 GGTGCTACAAGCAAGGAGTTTCTGACACCGTGGGCAGAGATGCTTGCCCTGAGCTCACTC 208043 Query 114073 CCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 114132 | | || |||| | | ||| | ||||||||| ||| | ||||| | ||| Sbjct 208044 CAATTCCACCTTGAAGATGG-CTCAACACCCCACATATCTGGCTGCAATATACCCTTGGA 208102 Query 114133 GGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC 114192 | |||| || || ||| ||| ||||||| || || ||||| || | ||| | | Sbjct 208103 GACTGGAGAGCCTTCATATGATTCGTATGTCCCATCCACCTCGGCAATTTCACAAGATGT 208162 Query 114193 CTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTC 114252 || |||||| || | || ||||||||||| ||| ||||| | | | || || Sbjct 208163 CTTGAGGGCAGCATAGTAAATTGTCTCAAAGATGTCCTTATTCAATTGCGTAGCTTCTGG 208222 Query 114253 GGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCC 114312 || || || | || | ||| || || | || || || || || || || | || Sbjct 208223 CGAGTCGAATGGAAGACCCAACAGGATGAAAGCGTCAGCAAGCCCCTGCACTCCCAAACC 208282 Query 114313 AATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATC 114372 |||||| | || || | || || | || || |||||||| || || | || ||| Sbjct 208283 AATTGGTCTGTGCCTTTTGTTTGATCTGCGTGCAGTCTCCACAGGGTAGTAGTTGACATC 208342 Query 114373 GATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 114426 || | | | || |||||||| || || |||||||| | ||| |||||| || Sbjct 208343 AATGATCTTGTTGAGATTTTTCGTCACCACCTTTGTCACTTCTGCAAGCTTCTC 208396 >seq3 Length=89890 Score = 100 bits (110), Expect = 3e-16 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 || || | || ||||||||| || |||||||| || | |||| || | || ||| Sbjct 49349 ACAGTCACCTGACGATCAAATCGCCCTGGGCGAAGCAAGGCGGAATCCAAGACATCTGGT 49290 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 | ||| || || || | |||| || || || | | ||||| || |||||||| ||| Sbjct 49289 CTGTTTGTGGCAGCAAGCACAATGACACCTGTGTTGCCTTCAAATCCGTCCATCTCTGTC 49230 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGC 10952 || || ||||||||||| || || | |||||||| | | | ||| || |||| | Sbjct 49229 AACAGCTGATTGATGGTCTGCTCTCTCTCATCATTACC--TCCTCCCATTCCAGCACCAC 49172 Query 10953 GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGG 10998 | || |||| ||||| || || ||||||||||||| ||| || || Sbjct 49171 GCTGTCTACCTACGGCATCGATCTCATCGATGAAAATGATGCATGG 49126 >seq600 Length=304360 Score = 86.0 bits (94), Expect = 7e-12 Identities = 302/469 (64%), Gaps = 2/469 (0%) Strand=Plus/Plus Query 10786 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 10845 ||| ||||| | ||||||||||| ||||| | || | ||||||| | |||||| || Sbjct 66540 ACGGTCAAATCTTCCTGGGCGGAGAAGGGCATTATCCAAGATATCAGCTCTGTTCGTGGC 66599 Query 10846 CGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATT 10905 || | || | || || || | ||||| ||||||||||| |||||||| || || Sbjct 66600 TGCAACCACGATAATACCAGTATTACCTTCAAATCCATCCATCTCTGTCAAGAGCTGGTT 66659 Query 10906 GATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACCGAC 10965 | ||||| || | ||| || || | | |||| | || || |||| || Sbjct 66660 CAATGTTTGCTCTCTTTCGTCGTTTCCTCCACCAACACCTGTACCACGAGATCTACCAAC 66719 Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 11025 || ||||| |||||||| || || || || || ||| || ||| || || | Sbjct 66720 AGCATCAATCTCATCGATAAAGACTATGCAAGGGGCATTCTCCTTGGCCTTTTTGAAAAG 66779 Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACA 11085 ||| | || | ||||| ||||| ||||||||||| || || | || | ||| | Sbjct 66780 ATCCCTCACACGGGATGCACCAACACCGACAAACATTTCGACGAATTCGGATCCTGAA-A 66838 Query 11086 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 ||| || ||| || || | || || || || || ||| || || ||||| || | Sbjct 66839 TTGAGAAGAATGGCACTCCTGCCTCTCCTGCAATAGCCTTGGCCAGAAGAGTCTTACCAG 66898 Query 11145 TCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTTCCAAAGTAGC 11204 | || ||| || | | ||| || |||||| |||| ||| | | | | Sbjct 66899 TACCTGGTGGGCCAACCAAGAGGCATCCCTTTGGGATTTTGGCGCCAACGGCTGTGAAAC 66958 Query 11205 GCTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGC 11253 |||| || | || | ||| ||||||||||| | || || | ||| || Sbjct 66959 GCTCTGGCTTCTTCAAGAATTCCACGATTTCCTGGAAATCCTGCTTTGC 67007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597347029110400