Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq221 107 2e-18 seq354 104 2e-17 >seq221 Length=83180 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | |||||| | || | || || || || ||||| ||||||||||| Sbjct 43850 CCTCCACGCAACCGAAGCACCAAGTGCAGTGTAGACTCCTTCTGAATATTGTAATCTGCC 43909 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || ||| | || ||||||||||| || || | || || | |||||| || || || Sbjct 43910 AATGTACGCCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGTCTCTGCTGATCAGGCGGG 43969 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || ||||| ||| ||| ||| | ||||| | || || Sbjct 43970 ATCCCCTCCTTATCCTGAATTTTCGACTTGACATTCTCAATCGTATCTGAAGACTCGACC 44029 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | |||| |||||| || |||| ||||| |||||||| ||||| Sbjct 44030 TCGAGGGTTATGGTCTTCCCAGTCAGTGTTTTGACGAAAATCTGCAT 44076 >seq354 Length=2136 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||| | |||||| | || | || || || || || |||||||||||||| Sbjct 1936 CCTCCTCTCAAGCGAAGCACCAAGTGCAATGTAGACTCCTTCTGGATGTTGTAATCTGCC 1995 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || ||||||||||| ||| | ||||| |||||||| || || ||| Sbjct 1996 AACGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGA 2055 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || || || || || ||| ||| || | ||||||| | || || Sbjct 2056 ATACCTTCCTTGTCCTGAATCTTCGACTTGACATTTTCAATTGTATCAGACGACTCTACC 2115 Query 64397 TCTACAGTTACGGTCTTGCC 64416 || | || | ||||||||| Sbjct 2116 TCAAGCGTGATGGTCTTGCC 2135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499639303907200