Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq457 105 7e-18 >seq457 Length=513114 Score = 105 bits (116), Expect = 7e-18 Identities = 426/665 (64%), Gaps = 12/665 (2%) Strand=Plus/Minus Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038 || |||| |||| || ||||| ||||| |||||| || || ||||| ||||| Sbjct 209152 GGCATTTATGACACTCTGAAGGAGTGTGCTTGCATCTCCAAGAGTGCAGGGGGCATCGGT 209093 Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098 | | | || | | | || | ||||| || || || || || ||||| || || Sbjct 209092 CTGTCTATGCATAATATCAGAGCGACTGGTTCTTATATTCGTGGAACAAATGGAACTTCG 209033 Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158 || || | || ||||||||||| || ||||| || |||| | || || || ||||| Sbjct 209032 AATGGTATTGTACCTATGCTCCGTGTGTTCAATGACACGGCCAGATATGTTGATCAGGGA 208973 Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218 || |||| ||| || || | || || | || | ||||| |||||||| || | Sbjct 208972 GGGGGGAAGAGAAAAGGAGCGTTTGCCATGTACTTGGAGCCTTGGCACGCTGATATTTTC 208913 Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278 | | | || || | ||||| |||||||| || | |||||| ||||| | ||| Sbjct 208912 GACTGGCTTGAATTGAGGAAGAATCACGGCAAAGAAGAAGCGAGGGCAAGAGATTTGTTC 208853 Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGT 94338 |||| | ||| | ||||| || |||||| || | || | || || | |||| Sbjct 208852 TACGGGTTGTGGATCCCAGATCTCTTTATGCAAAGGGTTG----AAGCT-GGAGGAGAGT 208798 Query 94339 ----CTT-TTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTG 94393 ||| |||||||| |||||| || || || ||||| || ||| | |||| Sbjct 208797 GGTCCTTGTTTTGTCCAAATGAAGCCCCTGGTCTTGCCGACTGCTGGGGAGAACAATTTG 208738 Query 94394 AAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAGGCCAGGAAGGTTATGGATGCTAGG 94452 |||| || ||| || ||| ||| |||| || | ||| || | || Sbjct 208737 AAGAATTATATTTGAAATATGAA-CGCGAGGGACGTGCTCGTAAGTCCATCAAGGCCCAA 208679 Query 94453 AAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTC 94512 |||| ||| | ||| | || | || || |||||||| | || ||||| | ||| Sbjct 208678 CAGCTTTGGTTTGCCATCCTCGAAGCTCAAGTTGAGACGGGAAATCCTTACATGCTCTTC 208619 Query 94513 AAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAAT 94572 ||||| |||| |||| ||||| || || ||| || | || || || | || Sbjct 208618 AAGGATTCTGCCAACAGAAAGTCTAATCAACAGAACTTGGGCACAATTAAATCCAGTAAC 208559 Query 94573 CTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGC 94632 ||||||| || || | ||||| || ||||| || | ||| ||||| ||||| | Sbjct 208558 TTGTGCACTGAAATCATTGAGTACACAAGCCCGGATGAAACTGCAGTGTGCAACCTTGCA 208499 Query 94633 TCCAT 94637 ||||| Sbjct 208498 TCCAT 208494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494717758044800