Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq232 93.3 4e-14 >seq232 Length=44964 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 52629 GAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC 52688 || ||||||||| || | ||| ||||| ||||| ||| | |||||||||||| | | Sbjct 11839 GAGAAGGAGTTTATTTGCGACGCCCTGCCTGTCGACCTGATCGGCATGAACGCGAGGCTC 11898 Query 52689 ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA-GCCAAA 52747 |||| ||||||| || ||||| || ||| | || |||| || ||| | | ||| Sbjct 11899 ATGTCACAGTACATTGAATTTGTAGCTGATAGACTTCTGGTTGCCCTGGGGAATGACAAG 11958 Query 52748 GTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGAC 52807 || | ||| | | |||||| || || | ||| | ||||| | |||| ||||| Sbjct 11959 GT-GTACAATGTTGCCAATCCATTCGATTGGATGGAACTGATTTCTTTGCAGGGAAAGAC 12017 Query 52808 CAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || || ||||||||| |||| |||||||| Sbjct 12018 AAATTTCTTCGAGAAGAGAGTTGGCGAGTA 12047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256941113600