Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq221 147 2e-30 seq634 120 3e-22 seq429 116 4e-21 seq354 89.7 5e-13 >seq221 Length=83180 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126885 CTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGC 126944 |||| || || || || | |||||| || | |||||||| || |||||||||||||| Sbjct 43848 CTCCTCCACGCAACCGAAGCACCAAGTGCAGTGTAGACTCCTTCTGAATATTGTAATCTG 43907 Query 126945 CCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAG 127004 ||| || || ||| || ||||| || |||||| |||||| || ||||||||| || | Sbjct 43908 CCAATGTACGCCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGTCTCTGCTGATCAGGCG 43967 Query 127005 GTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 | || |||||||| ||| |||||| ||||| | || | || || | | ||||| Sbjct 43968 GGATCCCCTCCTTATCCTGAATTTTCGACTTGACATTCTCAATCGTATCTGAAGACTCGA 44027 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 | |||| ||| | || || || ||||| ||||| || ||||||||||||| Sbjct 44028 CCTCGAGGGTTATGGTCTTCCCAGTCAGTGTTTTGACGAAAATCTGCATGG 44078 >seq634 Length=251403 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | |||||||| ||||| || || ||||| | | ||||| ||| || Sbjct 209629 ACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAATCTGCTAATGTGCGCCCATCTTCC 209570 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||| ||||||||| | ||||| ||||||||||| || || || |||||||||||| Sbjct 209569 AACTGCTTTCCAGCGAAAATCAAACGCTGCTGATCAGGTGGAATTCCCTCCTTGTCCTGA 209510 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | ||||| ||||| | | ||| || || | ||| | || || Sbjct 209509 ATCTTAGACTTGACATTTTCGATAGTGTCAGAAGACTCCACCTCCAGGGTGATGGTCTTC 209450 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || ||||| ||||| || ||||| Sbjct 209449 CCTGTGAGTGTTTTCACAAAGATTTGCAT 209421 >seq429 Length=364352 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || || || | ||||| |||| ||| ||||| ||||| || || ||||| || Sbjct 147038 CCCCCTCGCAAGCGAAGAACCAAGTGTAACGTTGACTCCTTTTGGATGTTATAATCCGCC 146979 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | ||| ||||||||| | ||||||| ||||||||| || || Sbjct 146978 AGGGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAATCTCTGCTGATCAGGTGGG 146919 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| || ||| || ||| ||||| | || | || || | ||| ||| Sbjct 146918 ATCCCCTCTTTATCCTGAATCTTCGACTTGACATTCTCAATCGTATCAGATGACTCTACT 146859 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || ||||| ||||| || ||||||||||| Sbjct 146858 TCCAGAGTAATAGTTTTTCCCGTCAGGGTTTTAACGAAAATCTGCAT 146812 >seq354 Length=2136 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || || | |||||| || | |||||||| || || || |||||||| ||| |||||| Sbjct 1945 AAGCGAAGCACCAAGTGCAATGTAGACTCCTTCTGGATGTTGTAATCTGCCAACGTGCGC 2004 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || ||||| || ||||| |||| | ||||||||||| || || || || ||| Sbjct 2005 CCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCC 2064 Query 127016 TTGTCCGTGATTTTCTGCTTGA 127037 |||||| || ||| ||||| Sbjct 2065 TTGTCCTGAATCTTCGACTTGA 2086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475495569491200