Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq429 113 4e-20 seq634 104 2e-17 seq221 86.0 6e-12 >seq429 Length=364352 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 45143 CGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCC 45202 |||||| ||||||||||| |||||||| | ||| ||| ||||| || ||||| Sbjct 147009 CGTTGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGCCCATCTTCCAACTGCTTTCC 146950 Query 45203 TGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 45262 ||| | ||||||| ||||| || || || || || |||||||| ||||| || || Sbjct 146949 AGCGAAAATCAATCTCTGCTGATCAGGTGGGATCCCCTCTTTATCCTGAATCTTCGACTT 146890 Query 45263 GATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGT 45322 || || | || || || ||||| ||||| ||||||| ||||| || || || || Sbjct 146889 GACATTCTCAATCGTATCAGATGACTCTACTTCCAGAGTAATAGTTTTTCCCGTCAGGGT 146830 Query 45323 TTTTACAAAAATTTGCATCG 45342 ||| || ||||| ||||||| Sbjct 146829 TTTAACGAAAATCTGCATCG 146810 >seq634 Length=251403 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTCCAATT 45195 ||||| || || ||||||||||| |||||||| ||| | || ||| ||||| | Sbjct 209624 ATGCAAGGTAGACTCCTTTTGGATGTTATAATCTGCT-AATGTGCGCCCATCTTCCAACT 209566 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 | ||||| ||| | ||||| || ||||| || || ||||| || || || || ||||| | Sbjct 209565 GCTTTCCAGCGAAAATCAAACGCTGCTGATCAGGTGGAATTCCCTCCTTGTCCTGAATCT 209506 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | |||| ||| | ||||| |||||||| || || || || | || || || | Sbjct 209505 TAGACTTGACATTTTCGATAGTGTCAGAAGACTCCACCTCCAGGGTGATGGTCTTCCCTG 209446 Query 45316 TTAGAGTTTTTACAAAAATTTGCATCGCG 45344 | || ||||| ||||| ||||||||| || Sbjct 209445 TGAGTGTTTTCACAAAGATTTGCATCTCG 209417 >seq221 Length=83180 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| || | || | ||| | ||||| || || ||||| || ||||| ||||| | Sbjct 43849 TCCTCCACGCAACCGAAGCACCAAGTGCAGTGTAGACTCCTTCTGAATATTGTAATC--T 43906 Query 45173 GACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | | | | | ||| || | || || || ||| | |||| || ||||| || ||| Sbjct 43907 GCCAATGTACGCCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGTCTCTGCTGATCAGGC 43966 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || ||||| |||||||| |||| || | || || ||||||||| Sbjct 43967 GGGATCCCCTCCTTATCCTGAATTTTCGACTTGACATTCTCAATCGTATCTGAAGACTCG 44026 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || || || || || ||||| || ||||| ||||| Sbjct 44027 ACCTCGAGGGTTATGGTCTTCCCAGTCAGTGTTTTGACGAAAATCTGCAT 44076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451998227964800