Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq880 776 0.0 >seq880 Length=74269 Score = 776 bits (860), Expect = 0.0 Identities = 763/985 (77%), Gaps = 0/985 (0%) Strand=Plus/Plus Query 7536 CAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGAC 7595 |||| | ||||| || |||||||||||||| | || ||||| ||||| || || | Sbjct 60340 CAGCTAAATCAAGTGGAAAGTTGTGAGCATTTCTTTCATGCATTACTTCAATACCTAAGT 60399 Query 7596 CAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGG 7655 ||||||||| | | || ||||| ||||| | ||||||||||| ||| | | | Sbjct 60400 TAGCACGGTTAACAATATCAGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTG 60459 Query 7656 ACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGA 7715 | ||||||||||||||||| || | ||| |||||||| || || ||| | |||||||| Sbjct 60460 ATTGGTTGAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTGA 60519 Query 7716 ACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGA 7775 |||| || ||||| |||||||| || || | ||||||||| | ||||| |||||||| | Sbjct 60520 ACCAAATACCAACTACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTAA 60579 Query 7776 ACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGG 7835 | ||||||||||||||||| | |||||||||||| || |||||||| ||||||||||| | Sbjct 60580 ATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGTAAG 60639 Query 7836 TCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCAC 7895 | |||||||||||||| || || ||||| | ||| || || ||||| ||||||| Sbjct 60640 TTTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTAGTTTCAC 60699 Query 7896 GAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGA 7955 | | | ||||| |||||||| ||||| ||||| || ||| | ||||||||||| | Sbjct 60700 GGATTAATGAAGAAGTTACAAGTGAACCGTGCATAGCTGAGAATAATGAACCACCAAATA 60759 Query 7956 CACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGA 8015 ||||||| || || | ||| ||||| |||||||| | |||||||||||| |||||||| | Sbjct 60760 CACCAGCAACACCTAACATATGGAATGGGTGCATTAAGATGTTGTGCTCAGCTTGGAATA 60819 Query 8016 CAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTT 8075 |||||||| ||||||| ||||| ||||| || | |||||| | |||||||||||||||| Sbjct 60820 CAAGCATGAAGTTGAATGTACCTGAGATACCTAATGGCATACCATCAGAGAAAGAACCTT 60879 Query 8076 GACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTA 8135 |||||| || || | || ||||||||| | |||||||||||||| || ||||| || | Sbjct 60880 GACCGATTGGGTAAATGATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAGTAAGCAA 60939 Query 8136 CACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATG 8195 || |||||| ||||||||||||| |||| |||| | ||||||||||||||||||||| | Sbjct 60940 CAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGTAAG 60999 Query 8196 CATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCC 8255 | | | ||| | | ||| || | | ||| | |||| |||||||||||||||| | || Sbjct 61000 AACATACACCTAAGAAGAAATGACATACAACTAATTGGTAAGGACCACCGTTGTATAACC 61059 Query 8256 ACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAG 8315 ||||||| | |||||| ||||||||||| || ||||| || | |||||| ||||| |||| Sbjct 61060 ACTCATCTAAAGAAGCAGCTTCCCAGATTGGGTAGAAATGTAAACCAATCGCGTTTGAAG 61119 Query 8316 AAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTT 8375 |||||||| ||||| |||||||||||||| || || | | ||||||| || || | Sbjct 61120 TTGGAACAACCGCACCTGAGATGATGTTGTTACCGTATAATAATGAACCAGAAACAGGCT 61179 Query 8376 CACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAAACAAATAG 8435 ||||||| || || || || || ||||||||||||| || |||| |||||| ||| Sbjct 61180 CACGGATACCATCGATATCAACTGGAGGAGCAGCGATAAATGCGATGATGAATACTGTAG 61239 Query 8436 CAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTGT 8495 |||| | || ||||| ||||| | ||||| |||||||||| || | ||| || | Sbjct 61240 TTGCAGTTAATAGAGTAGGGATCATTAATACACCAAACCAACCGATGTATAAACGGTTTT 61299 Query 8496 TGGTGGAGGTTACCCAGTTACAGAA 8520 ||| |||||||| | ||| || Sbjct 61300 CAGTGCTAGTTACCCACTCACAAAA 61324 Score = 518 bits (574), Expect = 4e-142 Identities = 720/1003 (72%), Gaps = 4/1003 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| ||||| || || || ||||| || |||||||| || ||||| Sbjct 50515 AGAGCGTTTCCACGTGGTAATACCTCCTCTGGGAATACTAATTTTTCATGAGGCTGATCT 50456 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATG-TTCTTGGTATAGAACGT 6381 | |||||||| || || | |||||||| |||| ||| || || |||||||| || Sbjct 50455 TGAGCAGCCATCCAAGCTCGAACACCTTCATCTAATAA-ATGATTTTTTGTATAGAAAGT 50397 Query 6382 CTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTC-TAA 6440 ||||| || ||||| ||||| || | || ||||| || ||||| ||||| || | ||| Sbjct 50396 TTCGAATTCAGGATCTTCCGCAGCACGAATTTCTTGAGATACAAAATCATATGCACGTAA 50337 Query 6441 GGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAA 6500 | |||| || | ||| | | ||||| | |||| | ||| | || || |||| Sbjct 50336 GTTTAAA-GCTAAACCTACTACGCCAATTGCACTCATCCATAAACCAGTTACTGGTACAA 50278 Query 6501 ACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACC 6560 | | |||||||||||||| |||||| ||||| || || | |||||| || || |||| Sbjct 50277 ATAACATAAAGAAATGTAACCAACGTTTATTTGAAAATGCTACACCAAAAATTTGTGACC 50218 Query 6561 AGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCT 6620 |||||||||| || || ||||| ||||| || || || |||| || || | ||| || Sbjct 50217 AGAAACGATTCGCAGTTACCATTGAATATGTTTCTTCAGCTTGAGTTGGGTTAAATGCAC 50158 Query 6621 TGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAA 6680 ||| ||||||| |||||||||||||| || || || |||||||| ||||| || | Sbjct 50157 GGAATGTATTTGCACCATCACCATCTTCAAATAATGTGTTTTCTACAGTTGCACCATGGA 50098 Query 6681 TAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGA 6740 ||||||| || || ||| ||||||| | ||| ||||||||||||||||| || ||||| | Sbjct 50097 TAGCACATAGTAACGCTGCACCTAAAACACCAGCTACACCCATCATATGGAATGGGTTTA 50038 Query 6741 GCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAA 6800 |||||||| ||||| || || | ||| || | || ||||| || || |||||||||| Sbjct 50037 AAGTCCAGTTATGGAAACCTTGGAAGAATAGGATAAATCGGAAGATTGCGGCAACACCAA 49978 Query 6801 ACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAA 6860 | || ||||||||||| | || || || | |||||| || | || || || || | Sbjct 49977 AACTTGGTGCAAAGAACCAGCCAGATTGACCTAAAGGATAGATTAAGAAAACTGATACGA 49918 Query 6861 AGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGTG 6920 | || ||||| || | || || |||||||| || || |||||||| ||| ||||| Sbjct 49917 AAACTGCAATTGGTGCTGAGAAAGCGATTGCGTTATATGGACGAATTTTTACTGAACGTG 49858 Query 6921 CGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAA 6980 | |||||||| || || | ||| ||||| || | ||||| | || || | || |||| Sbjct 49857 CAATCTCAAATTGACGTAACATAAAACCAATTAAAGCAAATGAACCATGTAATGCAACAA 49798 Query 6981 AAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCC 7040 ||| ||||| || || | ||| ||| || || || || || |||||||| |||| Sbjct 49797 AAGTCCATAAACCACCTAATTGACACCAACGAGTAAAGTCGCCTTGTGCTTCTGGGCCCC 49738 Query 7041 ATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGA 7100 ||| | | || ||||| || | | | ||||| || || || ||||| || | || Sbjct 49737 ATAATAATAATAATGAATGACCCATACTATTTGCAGGTGTAGAAACTGCAGCTGTTAAGA 49678 Query 7101 AATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAG 7160 ||||||| || || | | | |||||||| | || || || ||||| || || || | Sbjct 49677 AATTACAACCTTCTAAAAATGAAGAAGCTAAACCATGTGTATACCATGATGTAACAAATG 49618 Query 7161 TTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTG 7220 | | || || | ||| || || | ||| | |||||| ||| || | | | ||| | Sbjct 49617 TAATTCCAGTTAACCAGCCACCTAATGCTAAATAAGCACAAGGTAATAATAATAAACCAG 49558 Query 7221 ACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATC 7263 ||||||| ||||| ||||| | |||||| |||||||||||| Sbjct 49557 ACCAACCTACAAATACGAAACGATCACGACGAAGCCAGTCATC 49515 Score = 104 bits (114), Expect = 3e-17 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 176118 AGTATGGGCAGGGAGGGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCC 176177 ||| ||||| | | ||||||||||| |||||||| ||||| |||||||||| |||||| Sbjct 33636 AGTTTGGGCCGAGCTGGATTTGAACCAGCGTAGGCAAAGCCAACGGATTTACAATCCGCC 33577 Query 176178 TCCATTAACCACTCGGACACCTACCCT 176204 ||||||||||||||||||| | ||||| Sbjct 33576 TCCATTAACCACTCGGACATCGACCCT 33550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622117956627200