Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq556 159 4e-34 seq457 149 8e-31 seq3 87.8 2e-12 >seq556 Length=75407 Score = 159 bits (176), Expect = 4e-34 Identities = 317/464 (68%), Gaps = 23/464 (5%) Strand=Plus/Minus Query 176526 AGAAAGACTTTGACTGCGTACCCTTGGAAGCCTTGATGATTGGTGTCACCATTGAGACCA 176585 ||||||| | |||| | | ||||| | ||||||||||||||| || | | | || | Sbjct 30008 AGAAAGAAATAGACTCCTTGCCCTTTGTAGCCTTGATGATTGGAGTGATGAATTCGATAA 29949 Query 176586 CAAACCCC---AACTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGAC 176642 ||| || | || || || ||||| |||||| ||| | | ||| | ||| || | Sbjct 29948 GAAAGCCTGGAATTTTCAGCAGAGATGGATAGAAGTGGTGCAAGAAATTCATGATAAGTC 29889 Query 176643 CCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAA 176702 |||||||||| || ||||||| |||| ||||||||| ||||| | | ||||| || | Sbjct 29888 CCTTAATGTGAGATCCATCGTGATCCTGATCCGTCATGATCATCAAGTGCCCATATCGCA 29829 Query 176703 GCTCGGA---AACATCTTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGAT 176759 | ||| ||||| | ||| |||| || || || || |||||||||| ||||| || Sbjct 29828 G---GGACTTGACATCCTCATAGACCTTTCCATGCTGGAGCCCCAAAATCTGCTTGATAT 29772 Query 176760 CATTGAACTCTTGGTT-----TGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTT 176814 |||| ||| ||| |||| ||| | | ||||| || || || ||||| Sbjct 29771 TGTTGATTTCTGCGTTGCCAGTGATTTGACTAG---CACTG--GCATCTCGAACATTCAG 29717 Query 176815 ACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGC 176874 | || || || || ||||| || ||||| |||| | ||||| || || | |||| Sbjct 29716 CAATTTTCCTCGAAGTGGGAAGACTCCGTATCGATCTCTTCCAACAACTGACAAACCACT 29657 Query 176875 AACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGT--ACACTTTCCAGAT 176932 | || | | ||| || ||||| ||||| |||| |||||| || || ||||| | | Sbjct 29656 GATGGCCAATGACTTTGCAGAATCTCCCTCTGTCAGGATGAGTGTGCACTCTTTCGAATT 29597 Query 176933 TGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACC 176976 | | || ||||| | || ||||| ||||| || || ||||| Sbjct 29596 TCTTCC--TCCCGCATCATTTGCATCATCCAATTTTGGGATACC 29555 >seq457 Length=513114 Score = 149 bits (164), Expect = 8e-31 Identities = 592/925 (64%), Gaps = 19/925 (2%) Strand=Plus/Plus Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 || || || || || || ||||| | || |||||| |||||||| || ||||| Sbjct 208491 GCAATGGATGCAAGGTTGCACACTGCAGTTTCATCCGGGCTTGTGTACTCAATGATTTCA 208550 Query 116491 GTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 116548 || ||||| || || | | |||| ||||||||||||| |||||| |||||| |||| Sbjct 208551 GTGCACAAGTTACTGGATT--TAATTGTGCCCAAGTTCTGTTGATTAGACTTTCTGTTGG 208608 Query 116549 ACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 116608 | ||||||| ||||||| || || | |||||||| ||| | | ||| || || Sbjct 208609 CAGAATCCTTGAAGAGCATGTAAGGATTTCCCGTCTCAACTTGAGCTTCGAGGATGGCAA 208668 Query 116609 TCCATACATCGGCGGCTGGCACAG--TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTT 116663 ||| | || | ||| | ||| || || || ||||| || || || Sbjct 208669 ACCAAA-----GCTGTTGGGCCTTGATGGACTTACGAGCACGTCCCTCGCGTTCATATTT 208723 Query 116664 TGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTG 116722 || | | ||||| | ||| ||| |||| || | || || || || | || || Sbjct 208724 CAAATATAATTCTTCAAATTGTTCTCCC-CAGCAGTCGGCAAGACCAGGGGCTTCATTTG 208782 Query 116723 GACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 116782 |||| || | ||||| | || || | ||||||| | ||| ||||| |||||||||| Sbjct 208783 GACAAAACAAGGACCACTCTCCTCCAGCTTCAACCCTTTGCATAAAGAGATCTGGGATCC 208842 Query 116783 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 116842 | | | | |||| | ||| | | |||||||| | || ||||| | ||| | Sbjct 208843 ACAACCCGTAGAACAAATCTCTTGCCCTCGCTTCTTCTTTGCCGTGATTCTTCCTCAATT 208902 Query 116843 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGC 116902 | | |||| | ||||| |||||||| || |||| ||||| || | | || || | Sbjct 208903 CAAGCCAGTCGAAAATATCAGCGTGCCAAGGCTCCAAGTACATGGCAAACGCTCCTTTTC 208962 Query 116903 ---GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAA 116959 | || |||| | ||||| || ||||| | || || || || ||||| || | Sbjct 208963 TCTTCCCCCCTCCCTGATCAACATATCTGGCCGTGTCATTGAACACACGGAGCATAGGTA 209022 Query 116960 TGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGT 117019 ||||||| || |||||||| || |||||| ||| | ||||||| || | Sbjct 209023 CAATACCATTCGAAGTTCCATTTGTTCCACGAATATAAGAACCAGTCGCTCTGATATTAT 209082 Query 117020 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGC 117079 | || || ||| || |||||||| | ||| ||||| || |||||| | ||| || Sbjct 209083 GCATAGACAGACCGATGCCCCCTGCACTCTTGGAGATGCAAGCACACTCCTTCAGAGTGT 209142 Query 117080 CGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTG 117139 | || || || || || ||| ||| | ||| | ||||| || | || | Sbjct 209143 CATAAATGCCTTCAATACTATCATTCTTCATGCAGATCAAAAAGCACGAAGAAAGCTGAG 209202 Query 117140 GCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACA 117199 | | ||| ||||| || ||||| || ||||| | || || ||||| | || |||| Sbjct 209203 GGCGTGGAGTACCGGCATTGAACAGAGTTGGAGAGGCATGCGTGAACCATCTCTGAGACA 209262 Query 117200 TCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCC 117259 | | ||| ||||| | | | | ||| | ||| ||| || || | ||| || | Sbjct 209263 GCAGGTGGTATGTCTCAATGGCTGCATCAATATTCTCCTTGTGGATTCCAACTGAAACTC 209322 Query 117260 GCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCT 117319 ||| | ||||| || || | |||| | ||||| || ||| | | || Sbjct 209323 TCATGAGCATGTGCTGTGGCCTCTCCACGACACGACCATTGACCCTGAGCAAATATGAAC 209382 Query 117320 TCTCCAAGGTCTTGAGACCAAAATA 117344 ||||| || |||| ||||||||| Sbjct 209383 GCTCCAGAGTTTTGAAACCAAAATA 209407 Score = 122 bits (134), Expect = 1e-22 Identities = 536/837 (64%), Gaps = 15/837 (2%) Strand=Plus/Plus Query 115557 TCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGA 115616 || ||| || ||||| || |||||||| |||| |||||| || | | ||| | || | Sbjct 207569 TCTGAGATAATACATTCCAGTCTTGAGTCCCTTCTTCCAAGCGTGGAAATGAAGAGACGT 207628 Query 115617 CAACTTGG-AGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGA 115675 ||| ||| | ||| ||||| |||| | || | | ||| ||||| || ||| Sbjct 207629 CAATTTGCCAAAGT-TTGGATCAGACATGTGCACATTGAAAGATTGAGATTGGTCAATGT 207687 Query 115676 AGCGTCCCCGATCCGCCGCCATATCAATCA---CATCCTTCATCTTGATTTCCCACACAG 115732 | ||| | || || |||||||| | || || | || |||||| ||||| |||| Sbjct 207688 ATGCTCCTCTGTCGGCAGCCATATCCACCAAGACA-CGTTG--CTTGATCTCCCATACAG 207744 Query 115733 TTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTG 115792 | | || ||| |||||| | ||||| || |||| | | | | ||||| || Sbjct 207745 TCTTATAAAGGCTCTTAAGGTTGTCTGGAATGTCCAAG---TCCAGCACTGAGCCGTTTG 207801 Query 115793 CCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACC-AATCTTCTTGAGATCCTCC 115851 ||||| || ||||| | ||| ||||| || ||| | | ||| Sbjct 207802 ATGCCACCATTTCATTCTTCACAGAGGCATCCCAAAGACCCAAGCTTGTCAA-ATCACTA 207860 Query 115852 ACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTG 115911 | || |||| ||| || || ||||| || | ||| | ||| | ||| ||||| Sbjct 207861 AGAAGATGCTGATTCACCACTGTGAACTCTCCTGAGAGAACTCTTCTGACATAAATGTTT 207920 Query 115912 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 115971 | ||||||||||| |||||||||||||| || | || |||| ||| || ||||| ||| Sbjct 207921 GAAGTGTATGGCTCGAAGCACTCATTGTTCCCGAGAATCTGGGATGTTGATGCTGTTGGC 207980 Query 115972 ATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCG 116031 || ||||| | || | | ||| | || ||| | |||| | || |||| | Sbjct 207981 ATTGGTGCTACAAGCAAGGAGTTTCTGACACCGTGGGCAGAGATGCTTGCCCTGAGCTCA 208040 Query 116032 -TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTG 116090 ||| | || |||| | | ||| | |||||||||| ||| | ||||| | Sbjct 208041 CTCCAATTCCACCTTGAAGATGG-CTCAACACCCCACATATCTGGCTGCAATATACCCTT 208099 Query 116091 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCT 116150 ||| |||| || || ||| ||| || |||| || || ||||| || | ||| | Sbjct 208100 GGAGACTGGAGAGCCTTCATATGATTCGTATGTCCCATCCACCTCGGCAATTTCACAAGA 208159 Query 116151 CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 116210 | || |||||| || | || ||||||||||| ||| ||||| | | | || || Sbjct 208160 TGTCTTGAGGGCAGCATAGTAAATTGTCTCAAAGATGTCCTTATTCAATTGCGTAGCTTC 208219 Query 116211 GTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 116270 || || || | |||| ||| || || | || || || || || || || | Sbjct 208220 TGGCGAGTCGAATGGAAGACCCAACAGGATGAAAGCGTCAGCAAGCCCCTGCACTCCCAA 208279 Query 116271 GCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCT 116330 |||||||| | || || | || || | || || |||||||| || || | || Sbjct 208280 ACCAATTGGTCTGTGCCTTTTGTTTGATCTGCGTGCAGTCTCCACAGGGTAGTAGTTGAC 208339 Query 116331 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 116387 ||| || | | | || |||||||| || || |||||||| | ||| |||||| || Sbjct 208340 ATCAATGATCTTGTTGAGATTTTTCGTCACCACCTTTGTCACTTCTGCAAGCTTCTC 208396 >seq3 Length=89890 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 || || | || ||||||||| || |||||||| || | |||| || | || ||| Sbjct 49349 ACAGTCACCTGACGATCAAATCGCCCTGGGCGAAGCAAGGCGGAATCCAAGACATCTGGT 49290 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809 | ||| || || || | |||| || || || | | || || || |||||||| ||| Sbjct 49289 CTGTTTGTGGCAGCAAGCACAATGACACCTGTGTTGCCTTCAAATCCGTCCATCTCTGTC 49230 Query 12810 AAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGC 12867 || || ||||||||||| || || | |||||||| | | | ||| || |||| | Sbjct 49229 AACAGCTGATTGATGGTCTGCTCTCTCTCATCATTACC--TCCTCCCATTCCAGCACCAC 49172 Query 12868 GTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGG 12913 | || |||| ||||| || || || || ||||||| ||| || || Sbjct 49171 GCTGTCTACCTACGGCATCGATCTCATCGATGAAAATGATGCATGG 49126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613500451420800