Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq232 123 4e-23 >seq232 Length=44964 Score = 123 bits (136), Expect = 4e-23 Identities = 372/567 (66%), Gaps = 18/567 (3%) Strand=Plus/Minus Query 159919 GAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGAT 159978 |||||| ||||| || ||| || ||||| || |||||||| ||||||||||| | | Sbjct 11766 GAGGCATGCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCGTTGGAGAATGT 11707 Query 159979 GAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAA 160037 | || || | | ||| ||| ||||||||| ||||||| || ||| | ||| | Sbjct 11706 CAATCCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGGCA-CAGAAGGATCCGGAGA 11648 Query 160038 AAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGT 160097 | || || || || ||| || || || || | | ||| | ||||| || ||| | Sbjct 11647 AGAAAATTCCTTCAACGCAGGCGAATGCAACCAATCGCTCTGCGAAAGAATCGCTGGACT 11588 Query 160098 CATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCAC-GGCATGCGCTCGACG 160156 || |||| || ||||||| || |||||||| | ||| || | ||||| | Sbjct 11587 CAA---TCCATCTCATGGCCCAATCTGCCTTCTTCTTCAC-CACTGGTACTGTCTCGATG 11532 Query 160157 GCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAG 160216 || | |||| ||| || || ||||||||| || ||| ||| ||| Sbjct 11531 GCATGGAACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTCAAGCAG----GAG 11476 Query 160217 ----TACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGC 160272 ||||| || || | ||| || ||||| || || || || ||| | | || Sbjct 11475 ACTATACATCTCGCTATGAATATTCTCAATGGCGATTTGGAATCCATAAAAAGCTCTGGC 11416 Query 160273 CTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTC 160332 ||| | ||||||||||| || | | |||| ||| |||| || | || || Sbjct 11415 CTCTGGGATCTGCACCTCCTTCAAAAATCGTACCCCCAAATTCTCATTTACGATGCCATC 11356 Query 160333 GGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCT 160392 | || |||||||| || | ||| |||||||||||||||||||||| | || | || Sbjct 11355 AGATGCAGCAAAGAATGCAAGCACATGAGAGATGAAATGTCTCTCGTTGTCATTCAATC- 11297 Query 160393 CTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGC 160452 ||||||||| | | |||| ||| |||||||||||| || |||| || ||| Sbjct 11296 --CTTCCCAGTGCTTGATGTCTCCTCCCAGATCAACCTCTTCAGCTGTCCAGAAGGAAGC 11239 Query 160453 CTGAGCAGTTTTGTACATGGCCCAGAT 160479 || || | |||||||| ||||||| Sbjct 11238 CTCTGCCTTCTTGTACATTTCCCAGAT 11212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795146453292800