Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq634 134 3e-26 seq354 105 2e-17 seq429 98.7 2e-15 >seq634 Length=251403 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||||||||||| ||| || || || || || | |||||||||| ||||||||| Sbjct 209617 GTAGACTCCTTTTGGATGTTATAATCTGCTAATGTGCGCCCATCTTCCAACTGCTTTCCA 209558 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| || | ||||||||| || || |||||| || ||||||||||| ||| Sbjct 209557 GCGAAAATCAAACGCTGCTGATCAGGTGGAATTCCCTCCTTGTCCTGAATCTTAGACTTG 209498 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||||| ||||| | | || || |||| ||||| ||||| || ||||| ||| Sbjct 209497 ACATTTTCGATAGTGTCAGAAGACTCCACCTCCAGGGTGATGGTCTTCCCTGTGAGTGTT 209438 Query 199613 TTCACAAAAATTTG 199626 |||||||| ||||| Sbjct 209437 TTCACAAAGATTTG 209424 >seq354 Length=2136 Score = 105 bits (116), Expect = 2e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || |||||||| |||| |||||| || ||||| || | ||||| || |||||||| || Sbjct 1966 GTAGACTCCTTCTGGATGTTGTAATCTGCCAACGTGCGCCCATCCTCGAGCTGCTTGCCA 2025 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||||||||||||||| || || ||| ||||| ||||||||||| ||| Sbjct 2026 GCAAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGAATCTTCGACTTG 2085 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||| | || || | | ||||| || | |||||| ||||| ||| Sbjct 2086 ACATTTTCAATTGTATCAGACGACTCTACCTCAAGCGTGATGGTCTTGCCC 2136 >seq429 Length=364352 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||||||||||| ||| || || |||| || | |||||||||| ||||||||| Sbjct 147008 GTTGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGCCCATCTTCCAACTGCTTTCCA 146949 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| || | | |||||| || || || || ||| ||||||||||| ||| Sbjct 146948 GCGAAAATCAATCTCTGCTGATCAGGTGGGATCCCCTCTTTATCCTGAATCTTCGACTTG 146889 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || || | || || | || ||||| |||| || || || || ||||| || ||| Sbjct 146888 ACATTCTCAATCGTATCAGATGACTCTACTTCCAGAGTAATAGTTTTTCCCGTCAGGGTT 146829 Query 199613 TTCACAAAAATTTG 199626 || || ||||| || Sbjct 146828 TTAACGAAAATCTG 146815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178908307658960