Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq634 140 4e-28 seq354 105 8e-18 seq429 98.7 1e-15 >seq634 Length=251403 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||| | |||| |||||| ||| |||||||||||| || || || | | Sbjct 209647 CCTCCTCTCAAACGGAGGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAATCTGCT 209588 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | |||||| | || || | |||||| || ||||| ||||| |||||||| || | || Sbjct 209587 AATGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGATCAGGTGGA 209528 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||||| ||||| ||||| | | | ||||| || ||||| Sbjct 209527 ATTCCCTCCTTGTCCTGAATCTTAGACTTGACATTTTCGATAGTGTCAGAAGACTCCACC 209468 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || || || ||||| |||||||||||||| Sbjct 209467 TCCAGGGTGATGGTCTTCCCTGTGAGTGTTTTCACAAAGATTTGCAT 209421 >seq354 Length=2136 Score = 105 bits (116), Expect = 8e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || || | ||||| ||||||||| |||||| ||||| ||||| || | Sbjct 1936 CCTCCTCTCAAGCGAAGCACCAAGTGCAATGTAGACTCCTTCTGGATGTTGTAATCTGCC 1995 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | |||||| | || |||||||||||||| || || || | |||||||| || | || Sbjct 1996 AACGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGA 2055 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| ||||| | | | || || ||| || || Sbjct 2056 ATACCTTCCTTGTCCTGAATCTTCGACTTGACATTTTCAATTGTATCAGACGACTCTACC 2115 Query 46547 TCCACCGTGATGGTTTTGCCC 46567 || | ||||||||| |||||| Sbjct 2116 TCAAGCGTGATGGTCTTGCCC 2136 >seq429 Length=364352 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| || || || | || |||||| | || || | |||||| || ||||| Sbjct 147003 CTCCTTTTGGATGTTATAATCCGCCAGGGTGCGCCCATCTTCCAACTGCTTTCCAGCGAA 146944 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | |||||| || | || | | ||| || ||| |||||| ||||| | Sbjct 146943 AATCAATCTCTGCTGATCAGGTGGGATCCCCTCTTTATCCTGAATCTTCGACTTGACATT 146884 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||| || || || || |||| || || ||||| |||||||| |||||||| Sbjct 146883 CTCAATCGTATCAGATGACTCTACTTCCAGAGTAATAGTTTTTCCCGTCAGGGTTTTAAC 146824 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 146823 GAAAATCTGCAT 146812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565232182377600