Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq634 116 4e-21 seq232 114 1e-20 seq354 89.7 5e-13 seq429 84.2 2e-11 >seq634 Length=251403 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || || ||||||||| | || || ||| | | Sbjct 209421 ATGCAAATCTTTGTGAAAACACTCACAGGGAAGACCATCACCCTGGAGGTGGAGTCTTCT 209480 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || || || | ||||| ||||||||||| | || || Sbjct 209481 GACACTATCGAAAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCTGATCAG 209540 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| || || ||| |||| || | |||||| | || || ||| Sbjct 209541 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCACATTAGCAGATTATAAC 209600 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | || |||||||||| || ||||||||||| || Sbjct 209601 ATCCAAAAGGAGTCTACCTTGCATTTGGTCCTCCGTTTGAGAGGAGG 209647 >seq232 Length=44964 Score = 114 bits (126), Expect = 1e-20 Identities = 555/864 (64%), Gaps = 33/864 (4%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 |||||| ||| ||||| || ||||| || | ||||| || ||||| || ||||||| Sbjct 12066 CATCACTCCAGCCTTTTGGTACTCGCCAACTCTCTTCTCGAAGAAATTTGTCTTTCCCTG 12007 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG--TGCCG 132708 ||| ||||| || ||| |||| || || ||||| ||||| |||| | || Sbjct 12006 CAAAGAAATCAGTTCCATCCAATCGAATGGATTGGCAACATTGTACACCTTGTCATTCCC 11947 Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCA 132767 |||| | || || || || || || || || || ||||| || |||||| | |||| Sbjct 11946 --CAGGGCAACCAGAAGTCTATCAGCTACAAATTCAATGTACTGTGACATGAGCCTCGCG 11889 Query 132768 ATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGAC 132827 | | | || | ||| || ||||| || ||| | ||| | ||| | | || Sbjct 11888 TTCATG-CCGATCAGGTCGACAGGCAGGGCGTCGCAAATAAACTCCTTCTCTAATTCAAC 11830 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCC-GTTGC--ACCAAATGCTT 132884 |||| || ||||| || | | | || ||| || |||| | ||| | Sbjct 11829 GGCGTTCGTCACGATATCTGCGATTCTCTCCTTGCTGAGCTTGTTGTTGAGCAAGGAGTA 11770 Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 || | | ||| ||||| || || | ||||| || | || || | |||||| Sbjct 11769 GA---TGAGGCATGCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCGTTGGA 11713 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| ||||| || || | || || || ||||||||||| | ||||| ||| || Sbjct 11712 GAATGTCAATCCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGGCACAGAAGGATCC 11653 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064 || ||||| | || || ||| ||||| || |||| ||||| |||| | | Sbjct 11652 GGAGAAGAAAATTCCTTCAACGCAGGCGAATGCAACCAATCGCTCTGCGAAAGAATC--- 11596 Query 133065 TTTGCTGG---CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCAC-GGCATCG 133120 ||||| | ||||| | || ||||| || ||||| | || || ||| || | | Sbjct 11595 ---GCTGGACTCAATCCATCTCATGGCCCAATCTGCCTTCTTCTTCAC-CACTGGTACTG 11540 Query 133121 TTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCG-AGGAACGC--ACGTAGGTGTCGA 133177 | |||||||| | |||| | |||| ||| |||| | | ||| || || | Sbjct 11539 TCTCGATGGCATGGAACAGCTTG---TTCTTTTCAACAGGATCCTTGATGTATGTCTCAA 11483 Query 133178 TGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGT-AAAAG 133236 ||| |||||| || || | ||||| ||||||||||| || || | ||||| Sbjct 11482 GCAGGAGACTATACATCTCGCTATGAATATTCTCAATGGCGATTTGGAATCCATAAAAAG 11423 Query 133237 CACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACG 133296 | | | ||||| | |||||| || | || || | ||| ||| || || ||| Sbjct 11422 CTCTG-GCCTCTGGGATCTGCACCTCCTTCAAAAATCGTACCCCCAAATTCTCATTTACG 11364 Query 133297 ATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCG 133356 ||||| || || || || || || ||||| || ||||||||| | ||||||||| Sbjct 11363 ATGCCATCAGATGCAGCAAAGAATGCAAGCACATGAGAGATGAAATGTCTCTCGTTGTCA 11304 Query 133357 TTCAAGCGCTCCCAGTCGCGCG-TGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAA 133415 ||||| | ||||||| || | |||| ||| || ||||| || | ||||| || Sbjct 11303 TTCAATCCTTCCCAGT-GCTTGATGTCTCCTCCCAGATCAACCTCTTCAGCTGTCCAGAA 11245 Query 133416 CGACGCCTCGGCTTTTTTGTACAT 133439 || ||||| || || |||||||| Sbjct 11244 GGAAGCCTCTGCCTTCTTGTACAT 11221 >seq354 Length=2136 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| || || |||||| | || || ||||| ||||| | || ||||| ||||| || Sbjct 2069 GACAAGGAAGGTATTCCCCCTGATCAGCAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAG 2010 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | |||||| | || ||||||||||| ||||| | || |||| |||||||| Sbjct 2009 GATGGGCGCACGTTGGCAGATTACAACATCCAGAAGGAGTCTACATTGCACTTGGTGCTT 1950 Query 38457 CGTTTGAGAGGCGG 38470 || |||||||| || Sbjct 1949 CGCTTGAGAGGAGG 1936 >seq429 Length=364352 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || ||||| ||||| || || | || || ||| | | Sbjct 146812 ATGCAGATTTTCGTTAAAACCCTGACGGGAAAAACTATTACTCTGGAAGTAGAGTCATCT 146871 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || || | | || || || | || |||||||| || || | || || Sbjct 146872 GATACGATTGAGAATG-TCAAGTCGAAGATTCAGGATAAAGAGGGGATCCCACCTGATCA 146930 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | |||| ||| || || ||| |||| || | ||||||||| || || || Sbjct 146931 GCAGAGATTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCACCCTGGCGGATTATAA 146990 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | ||| | || ||||| || || ||| |||| || Sbjct 146991 CATCCAAAAGGAGTCAACGTTACACTTGGTTCTTCGCTTGCGAGGGGG 147038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500167298099200