Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq429 134 5e-26 seq221 129 2e-24 seq191 96.9 1e-14 seq779 91.5 6e-13 seq215 89.7 2e-12 seq430 86.0 2e-11 >seq429 Length=364352 Score = 134 bits (148), Expect = 5e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||||||||| ||||| || |||||||||||||| || || || |||||| Sbjct 146812 ATGCAGATTTTCGTTAAAACCCTGACGGGAAAAACTATTACTCTGGAAGTAGAGTCATCT 146871 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || || ||||| ||||| || || || || |||||||| Sbjct 146872 GATACGATTGAGAATGTCAAGTCGAAGATTCAGGATAAAGAGGGGATCCCACCTGATCAG 146931 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || |||||| | || || || | |||||||| | || ||||||||||||| Sbjct 146932 CAGAGATTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCACCCTGGCGGATTATAAC 146991 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| |||| | ||||| || Sbjct 146992 ATCCAAAAGGAGTCAACGTTACACTTGGT 147020 >seq221 Length=83180 Score = 129 bits (142), Expect = 2e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| |||||||||||||| || || || || || || || || || || Sbjct 44076 ATGCAGATTTTCGTCAAAACACTGACTGGGAAGACCATAACCCTCGAGGTCGAGTCTTCA 44017 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || |||||||| |||||||| || || || |||||||| Sbjct 44016 GATACGATTGAGAATGTCAAGTCGAAAATTCAGGATAAGGAGGGGATCCCGCCTGATCAG 43957 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || ||| | ||||| || ||||| ||||| | || ||||| ||||| ||| Sbjct 43956 CAGAGACTGATCTTCGCTGGGAAGCAGCTTGAGGATGGGCGTACATTGGCAGATTACAAT 43897 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | ||||| ||||| || Sbjct 43896 ATTCAGAAGGAGTCTACACTGCACTTGGT 43868 >seq191 Length=305721 Score = 96.9 bits (106), Expect = 1e-14 Identities = 348/538 (65%), Gaps = 10/538 (2%) Strand=Plus/Minus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 |||||||| ||||||||||| |||| ||| ||||| || || || | ||||| || || Sbjct 43965 ATTGGAATCGATCTTGGAACGACCTATTCTTGTGTTGGAGTGTATAAGAATGGTAAAGTC 43906 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 || || || || || || || ||| ||| ||||| || | || ||||| || Sbjct 43905 GAGATCATTGCCAACGATCAGGGAAATAGAATCACTCCCTCGTACGTGGCGTTTACTGAC 43846 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAAACA 451094 || || | | | || | ||||| || |||| || | || || | | | | Sbjct 43845 TCTGAGCGTTTGATTGGAGACGCTGCAAAGAATCA--GGCCACGTCCAACCCAACTAGAA 43788 Query 451095 CAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAG 451154 | || ||||||| || | || ||||| | | | | |||| || || || | Sbjct 43787 CTGTGTATGATGTGAAGAGATTGATTGGAAGGAACTTCAAGGATGCAGAGGTGCAGAAGG 43728 Query 451155 AGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGG-AAAGCCCTATATTCAAGTA 451213 | || | || | ||||| | | || | ||| ||| |||||||||| || || Sbjct 43727 ACAAGGATTTGGTGTCTTACAAGATTGTGGA-CAACAAGTCAAAGCCCTATGTTAGGGTG 43669 Query 451214 AA--TTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTA 451271 | | | |||| | | || || ||| | || || || ||||| | ||||| | | Sbjct 43668 GACGTGAACAAGGAGGAC--AAGACATTTTCGCCCGAGGAGATTTCTGCCATGGTGTTGA 43611 Query 451272 CTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTA 451331 | || ||||| || || || ||| ||| | ||| ||| | |||| || | | Sbjct 43610 CAAAGATGAAGGAGACTGCCGAAGCGTATCTGGGTAAGGAAGTCAAGCATGCTGTGGTGA 43551 Query 451332 CTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTG 451391 |||| || || || || ||||||||||| | || || || || |||||||| ||||| Sbjct 43550 CTGTGCCAGCATACTTTAATGATGCACAGAGACAGGCCACCAAGGATGCAGGTACTATTG 43491 Query 451392 CTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||||||| || || | || ||||| || || ||||| || ||||| | || ||||| Sbjct 43490 CTGGTTTGAACGTGGTGCGTATTATCAACGAGCCTACTGCGGCTGCAATTGCCTATGG 43433 >seq779 Length=187291 Score = 91.5 bits (100), Expect = 6e-13 Identities = 219/328 (67%), Gaps = 15/328 (5%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || |||||||| || ||||| || |||||| | || | || || || || ||||| Sbjct 104336 GCTGTGATTACTGTCCCAGCTTACTTTAATGATTCTCAGAGACAGGCTACGAAGGATGCT 104395 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | ||||||||||| | || ||||| ||||| ||||| ||||| || || || | Sbjct 104396 GGTAAGATTGCTGGTTTGGAAGTGCTTCGTATTATCAATGAGCCTACTGCTGCATCTTTG 104455 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || ||||| || | | ||||| || ||| || || || |||||||| Sbjct 104456 GCCTATGGTCT-------TGATAAGAAGTCCAACGAAACCATCCTT--GTCTTTGATTTG 104506 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 || || ||||| |||| ||||| || | | |||||| || ||||| || | Sbjct 104507 GGAGGTGGAACGTTTGATGTGTCTGTTCTCGAGGTCGGAGATGGTGTCTTTGAGGTGTTG 104566 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGAATGG 451621 | || || ||||| || | ||||| || || ||||||| ||||| || ||| Sbjct 104567 TCCACTTCCGGAGATACCCACTTGGGAGGAGATGACTTTGATAAGCGTATTGTTGACTGG 104626 Query 451622 TTGAAAACTGAT--GTTCAACGAAAACT 451647 || ||||| |||||| ||| ||| Sbjct 104627 CTG---GCTGATGAGTTCAA-GAAGACT 104650 >seq215 Length=26802 Score = 89.7 bits (98), Expect = 2e-12 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 || |||||||| || || || |||| | || | ||||| || | || || ||||| Sbjct 8596 AAGATGAAAGAGACTGCTGAGAGATATCTCGGCCGTTCAGTTTCTCAAGCTGTGGTTACT 8537 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 ||||| || |||||||||||| || |||| || || || ||||| ||| ||||| Sbjct 8536 GTTCCTGCGTATTTCAATGATCATCAGAGGCAGGCTACCAAGGATGCTGGAAGAATTGCA 8477 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440 || || |||| || || || || ||||| || |||||||| || || Sbjct 8476 GGGTTGGATGTGCTCCGCATCATCAATGAGCCAACAGCAGCAGCGCT 8430 >seq430 Length=82441 Score = 86.0 bits (94), Expect = 2e-11 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 || |||||||| || || || |||| | || | ||||| || | || || ||||| Sbjct 80062 AAGATGAAAGAGACTGCTGAGAGATATCTCGGCCGTTCAGTTTCTCAAGCTGTGGTTACT 80003 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 ||||| || |||||||||||| || |||| || || || ||||| ||| ||||| Sbjct 80002 GTTCCTGCGTATTTCAATGATCATCAGAGGCAGGCTACCAAGGATGCTGGAAGAATTGCA 79943 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440 || || |||| || || || || ||||| || ||||| || || || Sbjct 79942 GGGTTGGATGTGCTCCGTATCATCAATGAGCCAACAGCGGCAGCGCT 79896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975696123775040