Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq232 174 2e-38 seq556 158 2e-33 seq600 136 5e-27 seq3 131 2e-25 seq457 127 3e-24 >seq232 Length=44964 Score = 174 bits (192), Expect = 2e-38 Identities = 307/435 (71%), Gaps = 17/435 (4%) Strand=Plus/Plus Query 101904 CTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATA-ACAACTTTGC 101962 || ||||||||||||| || ||||| || || ||||||| | || | ||| Sbjct 11335 CTTGCATTCTTTGCTGCATCTGATGGCATCGTAAATGAGAATTTGGGGGTACGATTTT-- 11392 Query 101963 TGATG-AGGTGCA-ATCCTCTGAAGCGAGATCTTTCTATGCGTATCAAT--GTCATAATG 102018 ||| | ||||||| |||| | || || ||| |||| |||| | ||| | ||| || Sbjct 11393 TGAAGGAGGTGCAGATCC-CAGAGGCCAGAGCTTTTTATGGATTCCAAATCGCCAT--TG 11449 Query 102019 AAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTG 102078 | | | ||| | |||| || ||| || | || | || || |||||| || || Sbjct 11450 AGAATATTCATAGCGAGATGTATAGTCTCCTGCTTGAGACATACATCAAGGATCCTGTTG 11509 Query 102079 AGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAA-AAGAAAGCGGAT 102137 | ||||| |||| || | |||||| | ||||| ||| || | || ||||| || ||| Sbjct 11510 AAAAGAACAAGCTGTTCCATGCCATCGAGACAGTACCA-GTGGTGAAGAAGAAGGCAGAT 11568 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTT-GCTGAGCGACTCTTCGCATT 102196 ||||| |||| ||| |||| | | ||| | |||| || |||||| | | ||||| Sbjct 11569 TGGGCCATGAGATGGATTGAGTCCA----GCGATTCTTTCGCAGAGCGATTGGTTGCATT 11624 Query 102197 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 102256 || || ||||| || || |||||||| || |||||||| || ||||| |||||||| || Sbjct 11625 CGCCTGCGTTGAAGGAATTTTCTTCTCCGGATCCTTCTGTGCCATTTACTGGCTCAAAAA 11684 Query 102257 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 102316 |||||| || | ||||| | |||||||||||| | ||||||||||| ||||| || Sbjct 11685 GCGAGGGCTGCTTCCAGGATTGACATTCTCCAACGAGTTGATCTCTCGTGATGAGGGGCT 11744 Query 102317 CCACCAAGAGTTTGC 102331 |||| ||| ||||| Sbjct 11745 CCACACAGATTTTGC 11759 >seq556 Length=75407 Score = 158 bits (174), Expect = 2e-33 Identities = 268/385 (70%), Gaps = 10/385 (3%) Strand=Plus/Minus Query 176690 TTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAA 176749 || || ||| ||| |||||| ||| | | ||| | || || ||||| ||||| || Sbjct 29934 TTCAGCAGAGATGGATAGAAGTGGTGCAAGAAATTCATGATAAGTCCCTTAATGTGAGAT 29875 Query 176750 CCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGA---AACA 176806 || |||| ||| ||||||||||||||| | | ||||| || || ||| ||| Sbjct 29874 CCATCGTGATCCTGATCCGTCATGATCATCAAGTGCCCATATCGCAG---GGACTTGACA 29818 Query 176807 TCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGG 176866 || | |||| |||| || || || || ||||| |||| ||||| || ||||| ||| | Sbjct 29817 TCCTCATAGACCTTTCCATGCTGGAGCCCCAAAATCTGCTTGATATTGTTGATTTCTGCG 29758 Query 176867 TTTGATGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGG 176926 || |||| || | || |||||| ||||||||| | || || ||||| ||| Sbjct 29757 TTGCCAGTGATTTGACTAGCACTGGCATCTCGAACATTCAGCAATTTTCCTCGAAGTGGG 29698 Query 176927 AAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCA 176986 ||||| ||||| |||| | ||||| || || | ||| | || | | || ||| Sbjct 29697 AAGACTCCGTATCGATCTCTTCCAACAACTGACAAACCACTGATGGCCAATGACTTTGCA 29638 Query 176987 GAATCACCCTCTGTCACGATGAGTGT--ACACTTGCCAGATTGTGCCGTACCCGCCTTGT 177044 ||||| |||||||||| ||||||||| || ||| | | || | || ||||| | | Sbjct 29637 GAATCTCCCTCTGTCAGGATGAGTGTGCACTCTTTCGAATTTCTTCC--TCCCGCATCAT 29580 Query 177045 TCGCATCATCCAATTTGGGAATACC 177069 | |||||||||||||| || ||||| Sbjct 29579 TTGCATCATCCAATTTTGGGATACC 29555 >seq600 Length=304360 Score = 136 bits (150), Expect = 5e-27 Identities = 252/367 (69%), Gaps = 2/367 (1%) Strand=Plus/Plus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||| ||||| | |||||||| || || || | ||| | ||||||| | | ||||| || Sbjct 66540 ACGGTCAAATCTTCCTGGGCGGAGAAGGGCATTATCCAAGATATCAGCTCTGTTCGTGGC 66599 Query 15944 GGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 || | || | |||||| || | ||||| ||||||||||||||||| |||||||| Sbjct 66600 TGCAACCACGATAATACCAGTATTACCTTCAAATCCATCCATCTCTGTCAAGAGCTGGTT 66659 Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 16063 | ||||| || | ||| || || || | |||| | || || | || || Sbjct 66660 CAATGTTTGCTCTCTTTCGTCGTTTCCTCCACCAACACCTGTACCACGAGATCTACCAAC 66719 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 |||||||||||||| || ||||| ||||| || ||| || || || || || Sbjct 66720 AGCATCAATCTCATCGATAAAGACTATGCAAGGGGCATTCTCCTTGGCCTTTTTGAAAAG 66779 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 16183 ||||| ||||| || || ||||| |||||||| || || || | | | ||| | Sbjct 66780 ATCCCTCACACGGGATGCACCAACACCGACAAACATTTCGACGAATTCGGATCCTGAA-A 66838 Query 16184 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 ||| || ||| || || | || || ||||| || ||| |||||||||||||| | Sbjct 66839 TTGAGAAGAATGGCACTCCTGCCTCTCCTGCAATAGCCTTGGCCAGAAGAGTCTTACCAG 66898 Query 16243 TACCTGG 16249 ||||||| Sbjct 66899 TACCTGG 66905 >seq3 Length=89890 Score = 131 bits (144), Expect = 2e-25 Identities = 276/410 (67%), Gaps = 4/410 (1%) Strand=Plus/Minus Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940 || ||||||||| || ||||||||||| | ||| ||| | || ||| | || || Sbjct 49341 CTGACGATCAAATCGCCCTGGGCGAAGCAAGGCGGAATCCAAGACATCTGGTCTGTTTGT 49282 Query 15941 TGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTG 16000 || || | |||| | |||||| | | ||||| || |||||||||||||| ||||| Sbjct 49281 GGCAGCAAGCACAATGACACCTGTGTTGCCTTCAAATCCGTCCATCTCTGTCAACAGCTG 49222 Query 16001 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTT 16058 || || || || || | |||||||| || | | ||| ||||||| || || | Sbjct 49221 ATTGATGGTCTGCTCTCTCTCATCATTACCT--CCTCCCATTCCAGCACCACGCTGTCTA 49164 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || |||||||| |||||||| ||||| | ||||||||| || | || ||| Sbjct 49163 CCTACGGCATCGATCTCATCGATGAAAATGATGCATGGCGCCTTGGCCTTGGCCTTTTCG 49104 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || || || || ||||| || |||||||| ||||||| ||| || || | || || Sbjct 49103 AACAGGTCACGGACACGGGATGCTCCCACACCCACAAACAGCTCTACGAATTCTGATGCA 49044 Query 16179 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 | ||| || ||| || || || || || | || ||||| | |||||| Sbjct 49043 GCACAGGAGAAGAATGGAGTTCCAGCCTCGCCAGCCACAGCCTTGGCGATCAACGTCTTA 48984 Query 16239 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 || || ||||| ||| | | ||| || || |||||||||||| || Sbjct 48983 CCTGTTCCTGGTGGACCGACCAAGAGAGCTCCCTTTGGAATCTTGGCACC 48934 >seq457 Length=513114 Score = 127 bits (140), Expect = 3e-24 Identities = 402/617 (65%), Gaps = 7/617 (1%) Strand=Plus/Minus Query 111604 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTG 111663 |||| | |||||| ||||| ||||| | || | | || ||||| ||| |||||| Sbjct 209349 TGGAGAGGCCACAGCACATGCTCATGAGAGTTTCAGTTGGAATCCACAAGGAGAATATTG 209290 Query 111664 ATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAA 111723 || | | | ||||||||| || | |||| | | ||||| || || | |||| Sbjct 209289 ATGCAGCCATTGAGACATACCACCTGCTGTCTCAGAGATGGTTCACGCATGCCTCTCCAA 209230 Query 111724 CCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTAT-TGCAAAC 111782 | || ||||| || ||||| ||| | || || | || || || | || |||| Sbjct 209229 CTCTGTTCAATGCCGGTACTCCACGCCCTCAGCTTTCTTCGTGCTTTTTGATCTGCATG- 209171 Query 111783 AAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAG 111842 ||| | ||| || | |||||||| | |||||| | || ||||| ||||| ||| Sbjct 209170 AAGAATGATAGTATTGAAGGCATTTATGACACTCTGAAGGAGTGTGCTTGCATCTCCAAG 209111 Query 111843 TGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGA 111902 | || || || ||||| || || ||| || ||||||| | ||| |||| | Sbjct 209110 AGTGCAGGGGGCATCGGTCTGTCTATGCATAATATCAGAGCGACTGGTTCTTATATTCGT 209051 Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 || |||||||| || |||||||| | || ||||| || || || || | ||| || Sbjct 209050 GGAACAAATGGAACTTCGAATGGTATTGTACCTATGCTCCGTGTGTTCAATGACACGGCC 208991 Query 111963 CGCTATGTAAACCAAGCTGGGCGTC---GCAAGGGATCTATCGCAGTCTATCTTGAGCCA 112019 | ||||| | || | ||| | | || ||| | | || | || | ||||| Sbjct 208990 AGATATGTTGATCAGGGAGGGGGGAAGAGAAAAGGAGCGTTTGCCATGTACTTGGAGCCT 208931 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCG 112079 |||||||| ||||| | || | ||||| ||| | || || || | || || ||| Sbjct 208930 TGGCACGCTGATATTTTCGACTGGCTTGAATTGAGGAAGAATCACGGCAAAGAAGAAGCG 208871 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | ||| | |||| || | ||||| ||||||||||| ||| | || ||||| Sbjct 208870 AGGGCAAGAGATTTGTTCTACGGGTTGTGGATCCCAGATCTCTTTATGCAAAGGGTTGAA 208811 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGT 112198 | | || | ||||| | ||||||||| | | || || ||||| |||| ||| | Sbjct 208810 GCTGGAGGAGAGTGGTCCTTGTTTTGTCCAAATGAAGCCCCTGGTCTTGCCGACTGCTG- 208752 Query 112199 GGGTGAGGAGTTTGAAG 112215 ||| || | ||||||| Sbjct 208751 GGGAGAACAATTTGAAG 208735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620735571833600