Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3 114 2e-20 seq600 113 5e-20 seq457 96.9 4e-15 >seq3 Length=89890 Score = 114 bits (126), Expect = 2e-20 Identities = 296/448 (66%), Gaps = 16/448 (4%) Strand=Plus/Minus Query 11467 CGTCCTTGAACA-CTGGG-----GAGAGTCACCTGAATCTTACGATCGAAACGACCTGGG 11520 || ||||||||| |||| || |||||||||| ||||| || || |||||| Sbjct 49373 CGGCCTTGAACATCTGGACGATCGACAGTCACCTGA------CGATCAAATCGCCCTGGG 49320 Query 11521 CGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCA 11580 || || | || ||| | | ||| | |||||| || |||| || | | || Sbjct 49319 CGAAGCAAGGCGGAATCCAAGACATCTGGTCTGTTTGTGGCAGCAAGCACAATGACACCT 49260 Query 11581 GTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCA 11640 || | || || |||||||| ||||| | ||||| ||||| ||||| || | |||| Sbjct 49259 GTGTTGCCTTCAAATCCGTCCATCTCTGTCAACAGCTGATTGATGGTCTGCTCTCTCTCA 49200 Query 11641 TCGTTGGAGGGCATACCA--CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGA 11698 || || | | | ||| || || ||||| |||| || || || |||||||||| Sbjct 49199 TCATT--ACCTCCTCCCATTCCAGCACCACGCTGTCTACCTACGGCATCGATCTCATCGA 49142 Query 11699 TGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCG 11758 |||| | ||| || || ||||| |||| |||||| || ||||| ||||| | Sbjct 49141 TGAAAATGATGCATGGCGCCTTGGCCTTGGCCTTTTCGAACAGGTCACGGACACGGGATG 49082 Query 11759 CTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACAT 11818 |||| ||||| || |||| ||| ||||| | || |||| ||| | ||| ||| Sbjct 49081 CTCCCACACCCACAAACAGCTCTACGAATTCTGATGCAGCACAGGAGAAGAATGGAGTTC 49022 Query 11819 TAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGA 11878 || ||| ||||| | || |||| | |||||||| || || |||| ||| | | Sbjct 49021 CAGCCTCGCCAGCCACAGCCTTGGCGATCAACGTCTTACCTGTTCCTGGTGGACCGACCA 48962 Query 11879 GAAGGGCGCCACGGGGGATCTTGGCACC 11906 || || || || ||||||||||| Sbjct 48961 AGAGAGCTCCCTTTGGAATCTTGGCACC 48934 >seq600 Length=304360 Score = 113 bits (124), Expect = 5e-20 Identities = 308/469 (66%), Gaps = 2/469 (0%) Strand=Plus/Plus Query 11502 ACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGC 11561 ||| || || | ||||||||||| || |||| ||| | ||||| | | ||| || || Sbjct 66540 ACGGTCAAATCTTCCTGGGCGGAGAAGGGCATTATCCAAGATATCAGCTCTGTTCGTGGC 66599 Query 11562 GGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621 |||| || | ||| ||||| | | || || || ||||| ||||| | |||||||| Sbjct 66600 TGCAACCACGATAATACCAGTATTACCTTCAAATCCATCCATCTCTGTCAAGAGCTGGTT 66659 Query 11622 GATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTACCGAC 11681 | || || || | || ||||| | |||||| ||| |||| || Sbjct 66660 CAATGTTTGCTCTCTTTCGTCGTTTCCTCCACCAACACCTGTACCACGAGATCTACCAAC 66719 Query 11682 AGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAG 11741 ||| |||||||||||||| || || || || || || | |||| || |||||| Sbjct 66720 AGCATCAATCTCATCGATAAAGACTATGCAAGGGGCATTCTCCTTGGCCTTTTTGAAAAG 66779 Query 11742 TTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACA 11801 || | ||||| || |||||||| || ||||| || ||||| | | | ||| | Sbjct 66780 ATCCCTCACACGGGATGCACCAACACCGACAAACATTTCGACGAATTCGGATCCTGAA-A 66838 Query 11802 CTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCG 11860 ||| | ||| || || | ||| || || || || || || ||||||||||| | Sbjct 66839 TTGAGAAGAATGGCACTCCTGCCTCTCCTGCAATAGCCTTGGCCAGAAGAGTCTTACCAG 66898 Query 11861 TACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGC 11920 |||| |||| ||| | | ||| || ||||| ||||| ||| | | | | Sbjct 66899 TACCTGGTGGGCCAACCAAGAGGCATCCCTTTGGGATTTTGGCGCCAACGGCTGTGAAAC 66958 Query 11921 GCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 |||| |||||||| | ||| ||||| || |||| | |||| ||| || Sbjct 66959 GCTCTGGCTTCTTCAAGAATTCCACGATTTCCTGGAAATCCTGCTTTGC 67007 >seq457 Length=513114 Score = 96.9 bits (106), Expect = 4e-15 Identities = 205/306 (67%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 109911 CTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACT 109970 |||| || ||||||||||||| || | || ||||| | | ||||| || | | Sbjct 208064 CTCAACACCCCACATATCTGGCTGCAATATACCCTTGGAGACTGGAGAGCCTTCATATGA 208123 Query 109971 CTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACAT 110030 ||||| | ||| || |||||||| | || | || | || || || |||| || || Sbjct 208124 TTCGTATGTCCCATCCACCTCGGCAATTTCACAAGATGTCTTGAGGGCAGCATAGTAAAT 208183 Query 110031 AGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACA 110090 |||||||| || | ||||| | || ||| ||||||| |||||||| | Sbjct 208184 TGTCTCAAAGATGTCCTTATTCAATTGCGTAGCTTCTGGCGAGTCGAATGGAAGACCCAA 208243 Query 110091 AAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTT 110150 || || || | || || || ||||| || || | |||||| || | ||| | |||| Sbjct 208244 CAGGATGAAAGCGTCAGCAAGCCCCTGCACTCCCAAACCAATTGGTCTGTGCCTTTTGTT 208303 Query 110151 AGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTT 110210 || | || ||||| || || ||||| ||||| || |||| | |||||||| || Sbjct 208304 TGATCTGCGTGCAGTCTCCACAGGGTAGTAGTTGACATCAATGATCTTGTTGAGATTTTT 208363 Query 110211 CGTCAC 110216 |||||| Sbjct 208364 CGTCAC 208369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588969521264000