Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq600 127 2e-24 seq232 122 1e-22 seq3 113 5e-20 seq556 98.7 1e-15 seq372 89.7 6e-13 >seq600 Length=304360 Score = 127 bits (140), Expect = 2e-24 Identities = 274/407 (67%), Gaps = 2/407 (0%) Strand=Plus/Plus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 ||| ||||| | ||||| || || || || | ||| | ||||||| | | ||||| || Sbjct 66540 ACGGTCAAATCTTCCTGGGCGGAGAAGGGCATTATCCAAGATATCAGCTCTGTTCGTGGC 66599 Query 9251 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310 || | || | |||||| || | | ||||| ||||||||||||||||| || ||||| Sbjct 66600 TGCAACCACGATAATACCAGTATTACCTTCAAATCCATCCATCTCTGTCAAGAGCTGGTT 66659 Query 9311 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 9370 | ||||| || | ||| || || || | |||| | || || | || || Sbjct 66660 CAATGTTTGCTCTCTTTCGTCGTTTCCTCCACCAACACCTGTACCACGAGATCTACCAAC 66719 Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 |||||||||||||| || ||||| || || || ||| || ||| ||| || || Sbjct 66720 AGCATCAATCTCATCGATAAAGACTATGCAAGGGGCATTCTCCTTGGCCTTTTTGAAAAG 66779 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9490 ||| | || | || || ||||| |||||||| || || || | | | ||| | Sbjct 66780 ATCCCTCACACGGGATGCACCAACACCGACAAACATTTCGACGAATTCGGATCCTGAA-A 66838 Query 9491 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 ||| || ||| || || | || || ||||| || ||| |||||||||||||| | Sbjct 66839 TTGAGAAGAATGGCACTCCTGCCTCTCCTGCAATAGCCTTGGCCAGAAGAGTCTTACCAG 66898 Query 9550 TACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596 ||||||| || | | |||| ||| ||| || ||||||||| Sbjct 66899 TACCTGGTGGGCCAACCAAGAGGCATCCCTTTGGGATTTTGGCGCCA 66945 >seq232 Length=44964 Score = 122 bits (134), Expect = 1e-22 Identities = 201/287 (70%), Gaps = 11/287 (4%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || |||||| |||||||| || || || | || || ||||| | ||| Sbjct 11759 GCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCGTTGGAGAATGTCAATCCT 11700 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 || | || || ||||| || | ||| ||||| || ||||| || ||||||||||| || Sbjct 11699 GGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGGCACAGAAGGATCCGGAGAAGAAAATT 11640 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA---GCGAGACTTTGTGTCA 117450 || || || || || || |||| | ||||| ||||| || || ||| ||| Sbjct 11639 CCTTCAACGCAGGCGAATGCAACCAATCGCTCTGCGAAAGAATCGCTGGAC------TCA 11586 Query 117451 AACCATTTCATTGCCCATTTCGCCTTCTTC-TCAATACATGGTACAGTTTGGATGGCTTC 117509 | |||| |||| ||||| | ||||||||| ||| || |||||| || | |||||| | Sbjct 11585 ATCCATCTCATGGCCCAATCTGCCTTCTTCTTCACCAC-TGGTACTGTCTCGATGGCATG 11527 Query 117510 AAATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCA 117556 || | || ||||||||| |||||| |||||| | |||| || Sbjct 11526 GAACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTCAAGCA 11480 >seq3 Length=89890 Score = 113 bits (124), Expect = 5e-20 Identities = 272/410 (66%), Gaps = 4/410 (1%) Strand=Plus/Minus Query 9188 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9247 || ||||||||| || ||||| ||||| | ||| ||| | || ||| | || || Sbjct 49341 CTGACGATCAAATCGCCCTGGGCGAAGCAAGGCGGAATCCAAGACATCTGGTCTGTTTGT 49282 Query 9248 CGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTG 9307 || || | |||| | |||||| | ||||| || |||||||||||||| || || Sbjct 49281 GGCAGCAAGCACAATGACACCTGTGTTGCCTTCAAATCCGTCCATCTCTGTCAACAGCTG 49222 Query 9308 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTT 9365 || || || || || | |||||||| || | | ||| ||||||| || || | Sbjct 49221 ATTGATGGTCTGCTCTCTCTCATCATTACCT--CCTCCCATTCCAGCACCACGCTGTCTA 49164 Query 9366 CCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 9425 || |||||||| |||||||| ||||| | || ||||| || | ||| |||| Sbjct 49163 CCTACGGCATCGATCTCATCGATGAAAATGATGCATGGCGCCTTGGCCTTGGCCTTTTCG 49104 Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485 || || || || || | || |||||||| ||||||| ||| || || | || || Sbjct 49103 AACAGGTCACGGACACGGGATGCTCCCACACCCACAAACAGCTCTACGAATTCTGATGCA 49044 Query 9486 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9545 | ||| || ||| || || || || || | || ||||| | |||||| Sbjct 49043 GCACAGGAGAAGAATGGAGTTCCAGCCTCGCCAGCCACAGCCTTGGCGATCAACGTCTTA 48984 Query 9546 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 || || ||||| ||| | | ||| || ||| |||||||||||| || Sbjct 48983 CCTGTTCCTGGTGGACCGACCAAGAGAGCTCCCTTTGGAATCTTGGCACC 48934 >seq556 Length=75407 Score = 98.7 bits (108), Expect = 1e-15 Identities = 178/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 168486 AGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTTGTTTGAACCCGTGTAG 168545 ||||| |||||||| ||||| || ||||| ||| ||||||||||| || || Sbjct 30582 AGACGAGTACCAAACTGACCTTGTGGAACAAGAGTGTTGATGTTGTTTGACCCAACAAAG 30523 Query 168546 TCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACT-TCACCATGGTGGTACGCAGA 168604 | | |||| ||||| || || |||| | || ||||| || || ||||| Sbjct 30522 TTCTGAGCCAGGCCGACAATGGTAGA-GCAAAGGGAGTTCTCGCCATGATGATATGCAGA 30464 Query 168605 CTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCATCCTTGAGATTCTTATG 168664 | || |||||||| | |||| |||||||||||| || || ||||||||| | | Sbjct 30463 ATGCTCGGCGACATACCCAGCCAATTGTGCCACCTTGATATCCGACTTGAGATTTCTTTT 30404 Query 168665 GAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACCATCCGCCATATGGGCAAT 168724 ||| ||||||||||| | ||||||||| ||| || || || ||| || | | || Sbjct 30403 GAAACAAGCATACATGATCTTCCTCTGTCCAGGTTTCAGCCCGTCCATGATGTTTGGGAT 30344 Query 168725 AGAGCGCTTCAAGTCTGC 168742 ||||||| || ||| || Sbjct 30343 CGAGCGCTCCAGGTCAGC 30326 >seq372 Length=29805 Score = 89.7 bits (98), Expect = 6e-13 Identities = 179/264 (68%), Gaps = 15/264 (6%) Strand=Plus/Plus Query 176852 ATCCACGACAATGCGGAGGTATTTGACACAAAGACCGAACACTCTATGAGGTACCTTCAG 176911 || ||||| ||| |||| |||||| |||||||| |||| | | |||||| ||| Sbjct 17106 ATTCACGAGGGTGCCCAGGTCTTTGACGTGAAGACCGAGTTCTCTTTCAAGTACCTCCAG 17165 Query 176912 ATCTTAACGGCATGTTGTGATTCGTTCGCACACGGTGCCAATGATGTTGCCAATTCAATC 176971 || | || || ||| | || | || || ||||||||||| ||||| || || || ||| Sbjct 17166 GTCATTACTGCCTGTGCTAATGCCTTTGCTCACGGTGCCAACGATGTGGCAAACTCCATC 17225 Query 176972 GGACCATTTGCCGCCATTTACGCCATCTATAAATCCG---GTACGGTCTCCAAGAATGCT 177028 || ||||||| || ||||| || |||| ||| || || | | ||||||| || Sbjct 17226 GGTTCATTTGCTGCAATTTATGCAATCTGGCAATGCGAATGTGCTGACTCCAAG---GC- 17281 Query 177029 GAAATGGGTAACGACGCATATTGGATTCTCTCCCTCGGAGCTGGTGGAATAGTTGTGGGT 177088 | ||| | || |||||| | | |||||| |||||| || || ||| Sbjct 17282 ---ACAGGT-----CCCAATTTGGATGTTTGTCATCGGAGGAATTGGAATCGTCGTTGGT 17333 Query 177089 CTCGCGACATATGGCTATAAGATT 177112 || | |||||||| || |||||| Sbjct 17334 CTTGGCACATATGGATACAAGATT 17357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589974310211200