Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq880 735 0.0 seq440 102 1e-16 >seq880 Length=74269 Score = 735 bits (814), Expect = 0.0 Identities = 749/977 (77%), Gaps = 0/977 (0%) Strand=Plus/Minus Query 179748 TTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTG 179807 || || ||||||||||| || | ||||| | || |||||||||| || || | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 179808 ATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCCC 179867 ||||| || ||||| || | ||||||| |||||| |||| || ||||||||||| Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCCT 61205 Query 179868 CCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 179927 || || || |||||||| |||||||| || || |||||||| | | || ||||||||| Sbjct 61204 CCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAAC 61145 Query 179928 ATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 179987 |||||||| ||||| |||||||| |||| ||||| |||||| | || ||||| || ||| Sbjct 61144 ATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAATC 61085 Query 179988 TGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGTC 180047 |||||||| || || | || |||||| | || ||||||||||||| |||| | || || Sbjct 61084 TGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTA 61025 Query 180048 TTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCGC 180107 | || ||| | | || | | | | ||||||||||||||||||||| | |||| || Sbjct 61024 TGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGT 60965 Query 180108 TTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCT 180167 || |||||||| || |||||| || || || || || ||||| |||||||| | ||| Sbjct 60964 TTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 60905 Query 180168 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCATT 180227 |||||| || | || || ||||||||||||| |||||||| | ||||| | || || Sbjct 60904 GTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTATC 60845 Query 180228 TCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCCC 180287 || || || ||||||| ||||||||| |||||||| |||||||||||| | |||||||| Sbjct 60844 TCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCA 60785 Query 180288 TTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGGT 180347 ||||| ||| | || || || ||||| || || |||||| | ||||| || ||||||||| Sbjct 60784 TTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 60725 Query 180348 TCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGGT 180407 ||||| || || |||||| | | |||||||| ||||||| || || ||| | ||| Sbjct 60724 TCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGGT 60665 Query 180408 TACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCGGT 180467 ||||| ||||||||||||||||| || ||||||||||| ||||| ||||| ||||| ||| Sbjct 60664 TACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGT 60605 Query 180468 CGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCA 180527 ||| | |||||||| || || || || |||||||| |||||| | ||||||||| | || Sbjct 60604 CGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGCT 60545 Query 180528 GCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAAC 180587 || ||||| || ||||| || ||||||||||| | || | || |||||||| ||| Sbjct 60544 GCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAAC 60485 Query 180588 CTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACT 180647 | || ||||||||||||||||| || | | ||| ||||||||||| |||||||| Sbjct 60484 TTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACACT 60425 Query 180648 TGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCT 180707 ||||| || | | ||||| ||| | ||||| ||||| ||||| || | |||||| Sbjct 60424 TGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATGCT 60365 Query 180708 CACAACTTCCCACTTGA 180724 |||||||| |||||||| Sbjct 60364 CACAACTTTCCACTTGA 60348 Score = 509 bits (564), Expect = 2e-139 Identities = 723/1014 (71%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 || ||||| |||||||||||||| || || || || || ||||| || |||||||| Sbjct 49503 TTCGACATTGTTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGT 49562 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 || | | || || ||||||| | ||| | || |||||| | ||||| | ||| ||| Sbjct 49563 TTATTATTATTACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTT 49622 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603 ||||| || ||||| || || || || || ||||| | | || ||| ||||||| | Sbjct 49623 GTTACATCATGGTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAATTTCTTA 49682 Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 181663 ||||| || || || || ||||| | |||||||||||| | | || | ||||| Sbjct 49683 ACAGCTGCAGTTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGC 49742 Query 181664 CCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTG 181723 || ||||| || ||||| || || ||| ||| | || || | ||| ||||||| Sbjct 49743 CCAGAAGCACAAGGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTT 49802 Query 181724 GCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCGT 181783 || | || || | || ||| | || ||||||||| | | |||||||| |||| ||| Sbjct 49803 GCATTACATGGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGT 49862 Query 181784 CTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTC 181843 | | ||| || || || || || || ||||| || | || ||||| || ||||| Sbjct 49863 TCAGTAAAAATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTA 49922 Query 181844 TCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGT 181903 || || || | ||||||||| | || ||||| | ||||||||||| || ||||| ||| Sbjct 49923 TCAGTTTTCTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGT 49982 Query 181904 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 181963 || || || || ||||| || | || ||| |||| || || ||||| ||||| | || Sbjct 49983 GTTGCCGCAATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAAC 50042 Query 181964 CCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCAC 182023 || ||||||||||||||||| |||||| | | |||| || ||||| | ||| || || Sbjct 50043 CCATTCCATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCAT 50102 Query 182024 GGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCA 182083 |||| || || || || || | | | |||| ||||| |||||||| ||| ||| Sbjct 50103 GGTGCAACTGTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCA 50162 Query 182084 TTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCT 182143 || | ||||||||| |||||||| ||||||||||| || ||||| || |||||||| Sbjct 50163 TTTAACCCAACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCA 50222 Query 182144 CAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTT 182203 || || || ||| | || ||| ||||| | ||||| |||||||||||| | ||||| Sbjct 50223 CAAATTTTTGGTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 50282 Query 182204 CCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGT 182263 || || | ||| | |||| ||| | || || | | ||| | ||| | ||| | ||| Sbjct 50283 CCAGTAACTGGTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCTTTAAACTTACGT 50342 Query 182264 GCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTC 182323 || ||||| |||||||| |||||||| | || | ||||| || || ||||| || ||| Sbjct 50343 GCATATGATTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTC 50402 Query 182324 TACACAAAGAA-CATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCA 182382 || ||||| || |||| | || |||||||| | || || ||| | || | ||||| Sbjct 50403 TATACAAAAAATCATT-TATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCA 50461 Query 182383 ACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || ||||| || || || ||||| ||||| |||||||| | || ||||| || Sbjct 50462 GCCTCATGAAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCT 50515 >seq440 Length=116468 Score = 102 bits (112), Expect = 1e-16 Identities = 175/254 (69%), Gaps = 9/254 (4%) Strand=Plus/Minus Query 145289 AGGATTGCTCGCTACCACAATATCTTCGGACCAGAAGGAACCTGGGAAGGTGGAAGAGAA 145348 || |||||||||| ||| || || | || ||| | ||||| ||| | |||||||||||| Sbjct 30249 AGAATTGCTCGCTTCCATAACATTTATGGTCCATATGGAACATGGAAGGGTGGAAGAGAA 30190 Query 145349 AAAGCACCAGCTGCAATCTGCCGCAAAGTCGCTTACCTCCCAACAGAGGGTGGTGCTATT 145408 || ||||||||||| ||||| | || || | || || | ||| || | | Sbjct 30189 AAGGCACCAGCTGCTTTCTGCAGAAAGGT------CATCACAGCCAAGGATGAGG---TG 30139 Query 145409 GAAGTGTGGGGTGATGGAGAACAGACAAGATCCTTCCTGTATATCGATGAATGCATTGAA 145468 ||| ||||||||||||| | ||||| |||| ||| | ||||||||| ||| |||| Sbjct 30138 GAAATGTGGGGTGATGGTAAGCAGACCCGATCTTTCACCTTTATCGATGACTGCGTTGAG 30079 Query 145469 GCAACCAGGAGACTGATGGACAGTGACTTTATGGGTCCTGTGAACATTGGTTCTGAAGAG 145528 | | |||| | | | || || | | | ||| ||||| | || ||||| ||| Sbjct 30078 GGTATTTTGAGAATCACCAAGAGCGATTACAGGATGCCTTTGAACTTGGGATCTGATGAG 30019 Query 145529 ATGGTTACCATCAA 145542 ||||| |||| || Sbjct 30018 ATGGTGTCCATGAA 30005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610390085635200