Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq880 699 0.0 seq229 140 4e-28 >seq880 Length=74269 Score = 699 bits (774), Expect = 0.0 Identities = 747/984 (76%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 169402 TTTTGCGAGTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTA 169461 ||||| ||||||||||| || | ||| | | || | |||||||||||||| || Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 169462 ATGATTCCATGCT-TACTCACAGCAGCAGCATGTTTCATCGTTGCATTCATTGCAGCACC 169520 ||||| || | || || | || ||| | || |||||| | ||||| || || || || Sbjct 61264 ATGATCCC-TACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCC 61206 Query 169521 TCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAA 169580 ||| || |||||||| || ||| | || || || | ||||| || || || |||||||| Sbjct 61205 TCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAA 61146 Query 169581 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAAT 169640 ||||||||| ||||| ||||||||| | |||||||| || || |||| ||||||||||| Sbjct 61145 CATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAAT 61086 Query 169641 CTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAAT 169700 ||||||||| || || | ||||| ||||| || || ||||||||||| || || || | Sbjct 61085 CTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 61026 Query 169701 CTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAG 169760 | || ||| | | ||| | | | |||||||| | |||||||| |||| | | | Sbjct 61025 ATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 60966 Query 169761 ATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGC 169820 ||||| |||||||| |||||| |||||| ||||| |||||||| |||| || || Sbjct 60965 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 60906 Query 169821 TGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 169880 ||||||| | | |||||| | ||||| ||||| |||||||||||||||||| ||||||| Sbjct 60905 TGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTAT 60846 Query 169881 CTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCC 169940 ||||||||| |||||||| ||| | || |||||||| ||||| ||||| ||||||| || Sbjct 60845 CTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCC 60786 Query 169941 TTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGG 170000 ||||| ||| ||| || || || | || || || || ||||||||||| ||||| || Sbjct 60785 ATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 60726 Query 170001 TTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGG 170060 ||||||||| ||||| || ||||| | ||||| || || | || ||| ||| | || Sbjct 60725 TTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGG 60666 Query 170061 TTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGG 170120 ||| || || || |||||||||||||| |||||||| ||||| || || ||||||||||| Sbjct 60665 TTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGG 60606 Query 170121 TCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGC 170180 |||| | |||||||| || |||||||| |||||||| | ||||||||||| |||| Sbjct 60605 TCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGC 60546 Query 170181 AGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAA 170240 | || || || || || | ||||| || || | ||||| | || |||||||| || Sbjct 60545 TGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAA 60486 Query 170241 CTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAAC 170300 ||| |||||||||||||| |||||||||||||| ||| | | || | || || Sbjct 60485 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 60426 Query 170301 ATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGC 170360 |||| |||| || | ||| | || ||||| ||||| ||||| ||||||||||||||||| Sbjct 60425 TTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATGC 60366 Query 170361 ACACAACTTCCCACTAGACCTAGC 170384 |||||||| ||||| || |||| Sbjct 60365 TCACAACTTTCCACTTGATTTAGC 60342 Score = 489 bits (542), Expect = 2e-133 Identities = 738/1046 (71%), Gaps = 25/1046 (2%) Strand=Plus/Plus Query 170523 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGG 170582 |||| || || || |||| |||||| | | |||||||| ||||| |||| ||| Sbjct 49497 GGTTTATTCGACATTGTTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGG 49556 Query 170583 TCTGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACT 170642 |||||| | ||| | | |||||||| || || || | ||||| ||||| || | | Sbjct 49557 TCTGGTTTATTATTATTACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATT 49616 Query 170643 ACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAAC 170702 || || |||||||||||||||||||||||| | ||||| |||| | | || || ||||| Sbjct 49617 ACATTTGTTACATCATGGTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAAT 49676 Query 170703 TTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT 170762 ||| ||||||| |||||||| ||||||| | ||||||||| | | || | Sbjct 49677 TTCTTAACAGCTGCAGTTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTA 49736 Query 170763 TGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAAC 170822 ||||| || ||||||||||| ||| |||||||| ||| | || |||||||||| Sbjct 49737 TGGGGCCCAGAAGCACAAGGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACT 49796 Query 170823 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATC 170882 ||||| ||||||||||| |||| | || ||||| ||| | | ||||||||||| Sbjct 49797 TTTGTTGCATTACATGGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATT 49856 Query 170883 GCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 170942 ||| | ||| || | || || |||||| |||| ||||| || || ||||| Sbjct 49857 GCACGTTCAGTAAAAATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTT 49916 Query 170943 TTCACTAGCATCTTTC-TGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATC 171001 ||| || || |||| | |||||||| ||||||| | |||||||| |||||| Sbjct 49917 TTC-GTATCAGTTTTCTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAG 49975 Query 171002 ATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTAC 171061 || ||||| || ||||| || || | |||| ||||| | ||||||||||| ||| || Sbjct 49976 TTTTGGTGTTGCCGCAATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGAC 50035 Query 171062 ATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGC 171121 || || ||||| || ||||||||||| || || | |||||| ||| ||| ||||||| Sbjct 50036 TTTAAACCCATTCCATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGC 50095 Query 171122 CATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAA 171181 || ||||||||||| || | |||||||| | ||||| || |||| Sbjct 50096 TATCCATGGTGCAACTGTAGAAAACACATTATTTGAAG------------ATGGTGAT-- 50141 Query 171182 TAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAG 171241 | |||| ||||||||||| ||| | || || || | |||||||| || Sbjct 50142 ---GGTGCAAA----TACATTCCGTGCATTTAACCCAACTCAAGCTGAAGAAACATATTC 50194 Query 171242 TATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAG 171301 ||| | || || || | ||||||||||| || |||||| | || || || || ||| | Sbjct 50195 AATGGTAACTGCGAATCGTTTCTGGTCACAAATTTTTGGTGTAGCATTTTCAAATAAACG 50254 Query 171302 ATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGG 171361 | ||||| ||| ||||||| || || || || | ||| | |||| | || || Sbjct 50255 TTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCAATTGG 50314 Query 171362 TATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGC 171421 | |||||| |||| | ||| | | ||||| ||||||||||||||||| || | || Sbjct 50315 CGTAGTAGGTTTAGCTTTAAACTTACGTGCATATGATTTTGTATCTCAAGAAATTCGTGC 50374 Query 171422 AGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTA-ATGAAGGTA 171480 || ||||| || || ||||| |||||||| || || ||| | || ||| |||||||| Sbjct 50375 TGCGGAAGATCCTGAATTCGAAACTTTCTATACAAAAAAT-CATTTATTAGATGAAGGTG 50433 Query 171481 TGAGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAG 171540 | |||| |||||| | | || || || ||||| || || ||||||||||| || | Sbjct 50434 TTCGAGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGG 50493 Query 171541 TGTTACCAAGAGGTAACGCACTTTAA 171566 | |||||| | || ||||| |||||| Sbjct 50494 TATTACCACGTGGAAACGCTCTTTAA 50519 >seq229 Length=92098 Score = 140 bits (154), Expect = 4e-28 Identities = 442/674 (66%), Gaps = 22/674 (3%) Strand=Plus/Plus Query 154442 TATGGTTCCACTTGGCAGTTGCACAATGAAATTAAATGCAGCAGCAGAACTAATGCCTGT 154501 |||| |||| ||||| ||||||||||| || |||||| | | || | || || || Sbjct 26218 TATGATTCCTCTTGGATCCTGCACAATGAAGTTGAATGCAACCTCTGAGATGATTCCAGT 26277 Query 154502 GTCATGGGAAGAGTTTGCTAACGTGCATCCA--CATACACCTATGATACAGACCATGGGT 154559 | ||| |||||| || ||| | |||||| | ||| | | ||| || | | ||| Sbjct 26278 CACGTGGCCAGAGTTGGCAAACATCCATCCATTCGTAC-CATTGGATCAAG-CAAAGGGA 26335 Query 154560 TATCAGAAAATTATAGATGACTTACAGAAATGGTTATGTGAT--ATCACAGGGTTTGATT 154617 |||||| |||| | || ||||| | ||| | || ||||| || || ||| Sbjct 26336 TATCAGGAAATGTTCGAGGACTTGGCTACCCAGTT--GGCATCCATCACCGGATTCGATG 26393 Query 154618 CTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCC 154677 || | || | || || ||| ||| || || || || || || || | | ||| Sbjct 26394 CTGTGTCTCTCCAGCCAAACAGTGGAGCAGCTGGAGAATACGCTGGCCTCATGTCTATCA 26453 Query 154678 AAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAG 154737 ||||| ||||| |||||| || | ||| || | || | || |||| || | Sbjct 26454 GGGCATATCATCAGTCCAGAGGAGACCATCACAGAGATATCTGCATCATTCCAGTATCTG 26513 Query 154738 CACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGT---AGGTGTCA 154794 | |||||||| ||||| || || ||||||| || ||||| |||| || || Sbjct 26514 CTCATGGAACCAATCCAGCCTCCGCCATCATGGCTGGAATGAAGATTGTGCCAGTTGG-- 26571 Query 154795 AGTGTGATGATGATGGTAACATAGACATCA---AAGATCTAGAGAAGAAAGCA-ATCATG 154850 ||| || || | || || || |||| | ||| | ||||| || | | || Sbjct 26572 AGTC-GACGAGAAGGGAAATATCAACATTAGCGAAGTGCGTCAGAAGGCAGAAGAGCACA 26630 Query 154851 AATACATTTGAACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAA 154910 | ||| || || || | ||||||||||| ||||||||||||||||| | |||| Sbjct 26631 AGGACAATT----TGGCAGCCCTCATGATTACATATCCATCTACACATGGTGTGTATGAA 26686 Query 154911 ACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGAT 154970 | | || |||| || || || | ||||| |||||||||||||| || | ||| Sbjct 26687 GATGGCGTTGATGAGATCTGCAACATTATCCATGAGAATGGTGGTCAGGTCTACATGGAT 26746 Query 154971 GGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTA 155030 || || || | ||||| || |||||| | | ||| ||| | |||||| ||||| Sbjct 26747 GGTGCCAACATGAATGCCCAAGTAGGATTGACTGCTCCAGGTGTGATTGGTGCTGATGTT 26806 Query 155031 TGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTA 155090 || ||| | || | || || |||||||| ||||| |||||||| ||||| || || | Sbjct 26807 TGCCATTTGAATCTCCACAAGACATTCTGCATTCCTCATGGAGGGGGAGGGCCAGGTATG 26866 Query 155091 GGTCCTATAGGTGT 155104 || || || || || Sbjct 26867 GGACCAATCGGAGT 26880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579206428659200