Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq880 758 0.0 >seq880 Length=74269 Score = 758 bits (840), Expect = 0.0 Identities = 762/987 (77%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 167862 TTTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 ||| || ||||||||||| ||| | ||||| | || |||||||||| || ||| | Sbjct 61325 TTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 61266 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 ||||| || ||||| || | ||||||| | || |||||| |||| || ||||||||| Sbjct 61265 AATGATCCCTACTCTATTAACTGCAACTA-CAGTATTCATCATCGCATTTATCGCTGCTC 61207 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || || ||||| || |||||||| || || |||||||| | | || ||||||| Sbjct 61206 CTCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACA 61147 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 |||||||||| ||||| ||||| || |||| || || ||||| | || ||||| || | Sbjct 61146 ACATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAA 61087 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 |||||||||| || || | ||||||||||| || ||||||||||||| |||| |||| | Sbjct 61086 TCTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTG 61027 Query 168161 TCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATC 168220 | | ||| ||| || | ||| | | | | |||||||| ||||| |||||| | || | | Sbjct 61026 TATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCC 60967 Query 168221 GTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTG 168280 ||||||||||||||||||||||| |||||| ||||| |||||||| |||||||| | | Sbjct 60966 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAG 60907 Query 168281 CAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 168340 | |||||| | | || || ||||||||||| ||||||||||| |||||| | || | Sbjct 60906 CTGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTA 60847 Query 168341 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 168400 ||||||| |||||||||| |||| | || ||||||||||||||||| || | ||||| | Sbjct 60846 TCTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACC 60787 Query 168401 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 168460 | ||||||||| | || |||||||| ||||||||||| || || |||||||||| Sbjct 60786 CATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACG 60727 Query 168461 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 168520 | | || |||||||| | | | || || ||||||| |||||| ||| | | Sbjct 60726 GTTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAG 60667 Query 168521 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 168580 ||||||| || || |||||||||||||| |||||||||||||| |||||||||||||| | Sbjct 60666 GTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTG 60607 Query 168581 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 168640 ||||||| |||||||||||||||||||| |||||||| || || || ||||||||| | | Sbjct 60606 GTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAG 60547 Query 168641 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 168700 |||| ||||| || || || || |||||||| || | || | || || |||||||| | Sbjct 60546 CTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTA 60487 Query 168701 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 168760 || | || ||||||||||||||||| || | | ||| || |||||||| | |||| Sbjct 60486 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACA 60427 Query 168761 CCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 168820 | ||||| ||| || | ||||| ||| | ||||| ||||| |||||||| | || | Sbjct 60426 CTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATG 60367 Query 168821 CACACAACTTCCCACTCGATCTTGCTG 168847 | |||||||| ||||| ||| | |||| Sbjct 60366 CTCACAACTTTCCACTTGATTTAGCTG 60340 Score = 482 bits (534), Expect = 3e-131 Identities = 725/1020 (71%), Gaps = 14/1020 (1%) Strand=Plus/Plus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 ||||| || | ||||||||||| || || || || ||||| | |||||||||||| Sbjct 49503 TTCGACATTGTTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGT 49562 Query 169367 CTACTTCTTCTT-CCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTT 169425 || || || || || ||| ||| | || | || || ||| | ||||| | | || Sbjct 49563 TTA-TTATTATTACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATT 49621 Query 169426 TGTTACTTCCTGGTACACCCACGGACTCGCTTC--CAGTTACTTAGAAGGCGCTAACTTC 169483 |||||| || ||||| || || || | ||||| || || |||||||| ||| ||| Sbjct 49622 TGTTACATCATGGTATACACATGGTTTAGCTTCTTCATTT--TTAGAAGGTTGTAATTTC 49679 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | || ||||| || ||||||||| | |||||| || ||| | | || ||||| Sbjct 49680 TTAACAGCTGCAGTTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGG 49739 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 || ||||||||||||||||| || ||| ||||||||||| |||||| | |||| ||| Sbjct 49740 GGCCCAGAAGCACAAGGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACTTTT 49799 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663 || ||| | |||||| ||||||| || |||||||| ||| | | || ||||| | ||| Sbjct 49800 GTTGCATTACATGGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCA 49859 Query 169664 CGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATT- 169722 ||| | || ||||| ||||| || || || ||||| | || ||||| || || Sbjct 49860 CGTTCAGTAAAAATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTC 49919 Query 169723 -TGTCAGTGTCTTTCTT-ATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCC 169780 | ||||| |||||| ||||| || | || || || ||||||||||| || Sbjct 49920 GTATCAGT---TTTCTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGT 49976 Query 169781 TTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACG 169840 ||||| || | ||||||||| | || | | ||| | ||||| ||||| |||||||| Sbjct 49977 TTTGGTGTTGCCGCAATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACT 50036 Query 169841 TTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCT 169900 || || |||||||| |||||||||||||| || | || || | ||| || || | |||| Sbjct 50037 TTAAACCCATTCCATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCT 50096 Query 169901 ATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTC 169960 |||||||||| || ||||| |||||||| | |||||| ||||| |||||||| ||| Sbjct 50097 ATCCATGGTGCAACTGTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTC 50156 Query 169961 AAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTC 170020 || ||| | | || || | ||||| || ||||| ||||| ||||| || || ||| Sbjct 50157 CGTGCATTTAACCCAACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTC 50216 Query 170021 TGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTG 170080 ||||| || || || ||| | || ||||| || || |||||| | ||||| || ||||| Sbjct 50217 TGGTCACAAATTTTTGGTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTA 50276 Query 170081 TTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAAT 170140 ||||| || || | ||| | |||| | |||||| | | || | ||| | || Sbjct 50277 TTTGTACCAGTAACTGGTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCTTTAAAC 50336 Query 170141 CTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAG 170200 | ||||| || ||||| || ||| || || | || || |||||||| ||||| || Sbjct 50337 TTACGTGCATATGATTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAA 50396 Query 170201 ACCTTCTACACCAAAAA-CATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGC 170259 || ||||| || ||||| ||| |||| ||||||| |||| || ||| |||| || Sbjct 50397 ACTTTCTATACAAAAAATCAT-TTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCA 50455 Query 170260 TGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 ||||| || |||||||| || | |||||||| || || | || | || ||||| || Sbjct 50456 AGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCT 50515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574467280790400