Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq880 756 0.0 >seq880 Length=74269 Score = 756 bits (838), Expect = 0.0 Identities = 761/986 (77%), Gaps = 2/986 (0%) Strand=Plus/Minus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 || || || ||||| ||| ||| | ||||| | || | |||||||| || || | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 163845 ATGATCCCTACGCTGCTTGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163903 ||||||||||| || | | ||||| | | || |||||| |||| || |||||||||| Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTA-CAGTATTCATCATCGCATTTATCGCTGCTCC 61206 Query 163904 CCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAA 163963 || || || ||||||||||| ||||| |||||| | ||||| | | || |||||||| Sbjct 61205 TCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAA 61146 Query 163964 CATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCAT 164023 ||||||||| ||||| |||||||| | || || || |||||| | || |||||||| || Sbjct 61145 CATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAAT 61086 Query 164024 TTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCGT 164083 |||||||| || || | ||||| ||| | |||||||||||||||| |||| | || || Sbjct 61085 CTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 61026 Query 164084 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACCG 164143 | || ||| | | ||| | | | | ||||||||||||||||||||| | |||| ||| Sbjct 61025 ATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 60966 Query 164144 TCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCGC 164203 | | ||||||||||| ||||| |||||||||||| ||||| ||||| ||||| | || Sbjct 60965 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 60906 Query 164204 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCAT 164263 || ||| | | || || ||||||||||||| |||||||| | ||||| | || || Sbjct 60905 TGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTAT 60846 Query 164264 CTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACCC 164323 ||| || || ||||||| |||| | || |||||||| |||||||||||| | |||||||| Sbjct 60845 CTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCC 60786 Query 164324 CTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164383 ||||||||| | || |||||||| |||||||| ||||| | ||| || |||||||| Sbjct 60785 ATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 60726 Query 164384 TTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGG 164443 ||| || || |||||||| | | |||||||| || |||| || || ||| | || Sbjct 60725 TTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGG 60666 Query 164444 TTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTGG 164503 |||||| |||||||||||||||||||| |||||||| || || ||||| ||||||||||| Sbjct 60665 TTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGG 60606 Query 164504 TCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 164563 |||| | |||||||||||||||||||| |||||||| ||||| || ||||||||| | || Sbjct 60605 TCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGC 60546 Query 164564 TGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCAA 164623 ||| ||||| || ||||| || |||||||| || | ||| |||| || |||||||| || Sbjct 60545 TGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAA 60486 Query 164624 CCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164683 | | || ||||||||||||||||| || | | ||| || |||||||| ||||||| Sbjct 60485 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 60426 Query 164684 TTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGC 164743 |||||| || || | ||||| ||| | ||||| ||||| ||||| || | || || Sbjct 60425 TTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATGC 60366 Query 164744 TCACAACTTCCCTCTGGATCTCGCTG 164769 ||||||||| || || ||| | |||| Sbjct 60365 TCACAACTTTCCACTTGATTTAGCTG 60340 Score = 484 bits (536), Expect = 7e-132 Identities = 719/1006 (71%), Gaps = 10/1006 (1%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTT-TT 165264 |||||||||||| || ||||||||||| ||||| ||||||||||| || || || || Sbjct 49515 GATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGG-TTTATTATTATT 49573 Query 165265 TCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTG 165324 || ||||||| | || | || || ||| | ||||| | ||| || | || || Sbjct 49574 ACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCATG 49633 Query 165325 GTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTTCTT-ACTGCGGCAG 165383 |||||| || || || || ||| | | | || ||| || |||||| || || |||| Sbjct 49634 GTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAA-TTTCTTAACAGCTGCAG 49692 Query 165384 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTC 165443 ||||||| || ||| | |||||||||||| | | | | ||||| || || || | Sbjct 49693 TTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCAGAAGCAC 49752 Query 165444 AAGGGGA-TTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCAC 165502 |||| || ||| || | ||| ||| | || || | ||| ||||||| || | || Sbjct 49753 AAGGCGACTTTACTC-GTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATTACAT 49811 Query 165503 GGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACGTCTCA-TCGG 165561 || | || ||| |||||||||| ||| | ||||| ||||| | |||||| ||| | Sbjct 49812 GGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGT-TCAGTAAA 49870 Query 165562 TATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 165621 || ||||| || || || || || ||||| | || || || ||||| || || || Sbjct 49871 AATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCAGTTTT 49930 Query 165622 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGC 165681 | ||||| ||| | |||||||| | ||||| || || ||| ||| || || || || Sbjct 49931 CTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTTGCCGC 49990 Query 165682 AATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCA 165741 ||||||| | || | || ||| | ||||| |||||||||||||| || || || || || Sbjct 49991 AATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTCCA 50050 Query 165742 TATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTAC 165801 |||||||||||| || ||| | | |||| || || || | ||| |||||||||| || Sbjct 50051 TATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGTGCAAC 50110 Query 165802 AGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTC 165861 ||||| || || | | | |||||||||| | ||||||||| ||| |||||| || | Sbjct 50111 TGTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTTAACCC 50170 Query 165862 TACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 165921 ||||||| |||||||| || |||||||| ||||| || ||||||||||| || || || Sbjct 50171 AACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAAATTTT 50230 Query 165922 CGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTAT 165981 ||| | || ||| ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 50231 TGGTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 50290 Query 165982 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 166041 ||| | |||| ||| | || || | | ||| | ||| | ||| | ||||| ||||| Sbjct 50291 TGGTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCTTTAAACTTACGTGCATATGA 50350 Query 166042 CTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAA 166101 |||||||| ||||| || | || || ||||| || || || ||||| ||||| || || Sbjct 50351 TTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTATACAAA 50410 Query 166102 AAA-CATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATG 166160 ||| |||| | || |||||||| |||| |||||| |||| | ||||| || |||| Sbjct 50411 AAATCATT-TATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCCTCATG 50469 Query 166161 AGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 | || || || ||||| || || || | || | || ||||| || Sbjct 50470 AAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCT 50515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556918673827200