Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq880 666 0.0 seq229 136 5e-27 >seq880 Length=74269 Score = 666 bits (738), Expect = 0.0 Identities = 731/972 (75%), Gaps = 0/972 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 || || || |||||||| ||| | ||| | | || | |||||||| |||||| | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| | | | || ||| | || |||||| | ||||| || || || ||| Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCCT 61205 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || |||||||| || ||| | || || ||| | ||||| || ||||| ||||||||| Sbjct 61204 CCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAAC 61145 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 |||||||| ||||| ||||||||| | |||||||| || ||| | || |||||||| ||| Sbjct 61144 ATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAATC 61085 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| || | ||||||| ||||| ||||| ||||||||||| || || || | Sbjct 61084 TGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTA 61025 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | || ||| | | ||| | | | |||||||| | |||||||| |||| | | | Sbjct 61024 TGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGT 60965 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 ||||||||| | |||||||| ||| || || |||||||| || | ||||| ||| Sbjct 60964 TTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 60905 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | || ||| ||||||| ||||| |||||||||||||||||| |||||||| Sbjct 60904 GTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTATC 60845 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 |||||||| |||||||| ||| | || |||||||| ||||| ||||| ||||||| || Sbjct 60844 TCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCA 60785 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 ||||| ||| ||| || || || | ||||| || || ||||||||||| ||||||||| Sbjct 60784 TTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 60725 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 || | || || ||||| ||||| | || || |||||| |||||| ||| | || Sbjct 60724 TCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGGT 60665 Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 ||||| || || |||||||||||||| |||||||| ||||| || || |||||||||||| Sbjct 60664 TACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGT 60605 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599 ||| | |||||||| || ||||| || |||||||| | | ||||||||| |||| Sbjct 60604 CGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGCT 60545 Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659 | || || || || || | ||||| || || | ||||| | || |||||||| ||| Sbjct 60544 GCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAAC 60485 Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACA 172719 | || |||||||||||||||||||||||||||||| | | ||| | | || Sbjct 60484 TTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACACT 60425 Query 172720 TGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCA 172779 |||| ||| || ||||| | || ||| ||||||| ||||| ||||||||||||||||| Sbjct 60424 TGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATGCT 60365 Query 172780 CACAACTTCCCA 172791 |||||||| ||| Sbjct 60364 CACAACTTTCCA 60353 Score = 488 bits (540), Expect = 6e-133 Identities = 739/1047 (71%), Gaps = 27/1047 (3%) Strand=Plus/Plus Query 172945 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGG 173004 |||| || || || |||| |||||| | | |||||||||||||| | || ||| Sbjct 49497 GGTTTATTCGACATTGTTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGG 49556 Query 173005 TCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACT 173064 |||||| | ||| | ||||||||||||| | | | ||||| ||||| |||| | Sbjct 49557 TCTGGTTTATTATTATTACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATT 49616 Query 173065 ACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAAC 173124 || || |||||||||||||||||||||||| | || ||||||| | | ||||| || Sbjct 49617 ACATTTGTTACATCATGGTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAAT 49676 Query 173125 TTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT 173184 || |||||||| ||||| || ||||||| | ||||||||| | | || | Sbjct 49677 TTCTTAACAGCTGCAGTTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTA 49736 Query 173185 TGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAAC 173244 ||||| || ||||||||||| || ||||||| ||| | || || |||||| Sbjct 49737 TGGGGCCCAGAAGCACAAGGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACT 49796 Query 173245 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATC 173304 ||||| ||||||||||| |||| | || ||||| ||| | ||||| |||||||| Sbjct 49797 TTTGTTGCATTACATGGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATT 49856 Query 173305 GCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 173364 ||| | ||| || | || || |||||| |||| ||||| || || ||||| Sbjct 49857 GCACGTTCAGTAAAAATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTT 49916 Query 173365 TTCACTAGCA-TCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTC 173423 ||| || || | || |||||||| || |||| || | |||||||| ||||| Sbjct 49917 TTC-GTATCAGTTTTCTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAG 49975 Query 173424 ATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTAC 173483 || ||||| || |||||||| || | |||| ||||| | ||||||||||| ||| || Sbjct 49976 TTTTGGTGTTGCCGCAATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGAC 50035 Query 173484 ATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGC 173543 || || ||||| || ||||||||||| || || | |||||| ||| ||||||||||| Sbjct 50036 TTTAAACCCATTCCATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGC 50095 Query 173544 CATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGG 173603 || ||||||||||| || | |||||||| | ||||| || ||| || Sbjct 50096 TATCCATGGTGCAACTGTAGAAAACACATTATTTGAAG------------ATGGTGATGG 50143 Query 173604 TAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAG 173663 | | | || ||| | |||||| | || || || | |||||||| ||| Sbjct 50144 T---------GCAAATACATTCCGTGCATTTAACCCAACTCAAGCTGAAGAAACATATTC 50194 Query 173664 TATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAG 173723 ||| | || ||||| | ||||||||||| || |||||| | ||||||||||| ||| | Sbjct 50195 AATGGTAACTGCGAATCGTTTCTGGTCACAAATTTTTGGTGTAGCATTTTCAAATAAACG 50254 Query 173724 ATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGG 173783 | ||||| ||| | ||||| || ||||| || | ||| | |||| | || || Sbjct 50255 TTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCAATTGG 50314 Query 173784 TATCGTAGGTCTTGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGAG 173842 | |||||| | || |||| |||| | ||||| || |||||||||||||| || | | Sbjct 50315 CGTAGTAGGTTTAGC-TTTAAACTTACGTGCATATGATTTTGTATCTCAAGAAATTCGTG 50373 Query 173843 CAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTA-ATGAAGGT 173901 | || |||||||| || ||||| |||||||| || || ||| | || ||| |||||||| Sbjct 50374 CTGCGGAAGATCCTGAATTCGAAACTTTCTATACAAAAAAT-CATTTATTAGATGAAGGT 50432 Query 173902 ATGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAA 173961 | |||| |||||| | || |||||| || ||||| || || ||||| ||||| || Sbjct 50433 GTTCGAGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAG 50492 Query 173962 GTGTTACCAAGAGGTAACGCACTTTAA 173988 || |||||| | || ||||| |||||| Sbjct 50493 GTATTACCACGTGGAAACGCTCTTTAA 50519 >seq229 Length=92098 Score = 136 bits (150), Expect = 5e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 159550 ATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAG 159609 ||||||||||||||||||||||||||||| | |||| | | |||| || || Sbjct 26651 ATGATTACATATCCATCTACACATGGTGTGTATGAAGATGGCGTTGATGAGATCTGCAAC 26710 Query 159610 ATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTA 159669 ||| | |||||||||||||||||||| || | |||||||| || | ||||| || ||| Sbjct 26711 ATTATCCATGAGAATGGTGGTCAGGTCTACATGGATGGTGCCAACATGAATGCCCAAGTA 26770 Query 159670 GGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACA 159729 || | | ||| ||| |||||| ||||| || ||| | || | || |||||| Sbjct 26771 GGATTGACTGCTCCAGGTGTGATTGGTGCTGATGTTTGCCATTTGAATCTCCACAAGACA 26830 Query 159730 TTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| ||||| |||||||| ||||| || || | || || || || || Sbjct 26831 TTCTGCATTCCTCATGGAGGGGGAGGGCCAGGTATGGGACCAATCGGAGT 26880 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 160037 CAGAAGATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACTATCGTGGC 160096 |||||||||| || ||| | ||||| |||||||| |||||||| || ||| | |||| Sbjct 27210 CAGAAGATATTGCCAAGCGTCTTATTGACTATGGTTTCCATGCTCCAACAATGAGTTGGC 27269 Query 160097 CTGTGTTAGGAACTATGATGGTAGAACCAACAGAGTCTGAGTC 160139 | ||| ||||| ||||| | || ||||||||||| ||||| Sbjct 27270 CAGTGGCTGGAACACTGATGATTGAGCCAACAGAGTCGGAGTC 27312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588044731436800