Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq880 673 0.0 >seq880 Length=74269 Score = 673 bits (746), Expect = 0.0 Identities = 741/991 (75%), Gaps = 12/991 (1%) Strand=Plus/Minus Query 167088 TTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTG 167147 ||||| || ||||| || |||||| | |||||| | || |||||||||| || || | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 167148 ATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCC 167206 ||||||||||| | | | ||||| | | || ||||||||||| || ||| |||||| Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTA-CAGTATTCATCATCGCATTTATCGCTGCTCC 61206 Query 167207 TCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 167266 ||| || || |||||||||||||| || || ||| |||||||| | | || |||||||| Sbjct 61205 TCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAA 61146 Query 167267 CATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCAT 167326 ||||||||| ||||| |||||||| |||| || || |||||| | || ||||| || || Sbjct 61145 CATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAAT 61086 Query 167327 CTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGT 167386 ||||||||| || | | || |||||||| ||||| |||||||||| |||| | || || Sbjct 61085 CTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 61026 Query 167387 TTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 167446 | || ||| | | || | | | | || |||||||||||||||||| | |||| ||| Sbjct 61025 ATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 60966 Query 167447 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGC 167506 | | ||||||||||| |||||| |||||| ||||| || ||||| |||||||| | || Sbjct 60965 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 60906 Query 167507 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTAT 167566 ||||||| || | || || |||||||||||||||||||||| | ||||| | ||||| Sbjct 60905 TGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTAT 60846 Query 167567 CTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 167626 ||| ||||||||||||| ||||||||| |||||||| |||||||||||| | |||||||| Sbjct 60845 CTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCC 60786 Query 167627 CTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGG 167686 ||||||||| | || |||||||| ||||| || ||||| | ||| || |||||||| Sbjct 60785 ATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 60726 Query 167687 TTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGG 167746 ||| || || || ||||| | | |||||||| || |||| || || ||| | || Sbjct 60725 TTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGG 60666 Query 167747 TTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGG 167806 |||||| || ||||| |||||||| || || |||||||| ||||||||||||||||| || Sbjct 60665 TTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGG 60606 Query 167807 TCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGC 167866 ||| | |||||||||||||| || || |||||||| || || | ||||||||||| || Sbjct 60605 TCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGC 60546 Query 167867 AGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAA 167926 || ||||| || |||||||| |||| ||| || Sbjct 60545 TGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAA 60486 Query 167927 CCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGAT-----AGTTCTGGTAAGGTTCTG 167981 | | || ||||||||||||||||| || | | ||| || || |||| || Sbjct 60485 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAA---TCAA 60429 Query 167982 CCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 168041 | |||||||| || | | ||||||||| | ||||| ||||| ||||| || | Sbjct 60428 C--ACTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGA 60371 Query 168042 AATGCTCACAACTTCCCTCTCGACCTTGCTG 168072 |||||||||||||| || || || | |||| Sbjct 60370 AATGCTCACAACTTTCCACTTGATTTAGCTG 60340 Score = 471 bits (522), Expect = 5e-128 Identities = 716/1006 (71%), Gaps = 10/1006 (1%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTT-TT 168553 |||||||||||| || ||||||||||| ||||| ||||||||||| || || || || Sbjct 49515 GATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGG-TTTATTATTATT 49573 Query 168554 TCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTG 168613 || ||||||| | || | || || ||| | ||||| | | | || || || || Sbjct 49574 ACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCATG 49633 Query 168614 GTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTT-ACTGCGGCAG 168672 |||||| || || || || ||| | | | || || || |||||| || || |||| Sbjct 49634 GTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAA-TTTCTTAACAGCTGCAG 49692 Query 168673 TTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCAC 168732 || ||| || ||| || |||||||||||| | | | | ||||| || || |||| Sbjct 49693 TTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCAGAAGCAC 49752 Query 168733 AAGGGGA-TTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCAC 168791 |||| || ||| || | ||||||||| | || || | ||| ||||||| || | || Sbjct 49753 AAGGCGACTTTACTC-GTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATTACAT 49811 Query 168792 GGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACGTCTCA-TCGG 168850 || | || ||| |||| ||||| ||| | ||||| ||||| | |||||| ||| | Sbjct 49812 GGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGT-TCAGTAAA 49870 Query 168851 TATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 168910 || ||||| || || || || || ||||| | || || || ||||| || || || Sbjct 49871 AATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCAGTTTT 49930 Query 168911 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGC 168970 | ||||| ||| | |||||||| | ||||| || || ||| ||| || || | || Sbjct 49931 CTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTTGCCGC 49990 Query 168971 AATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCA 169030 |||||||||||| | || ||| | ||||| |||||||||||||| | || ||||| || Sbjct 49991 AATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTCCA 50050 Query 169031 TATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTAC 169090 ||||||||||||||| ||| |||| || | ||| || || | ||| || ||||||| || Sbjct 50051 TATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGTGCAAC 50110 Query 169091 AGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAG 169150 ||||| || || | | | |||||||||| |||||||| ||| |||||| || Sbjct 50111 TGTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTTAACCC 50170 Query 169151 CACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 169210 ||||| | || || || ||||||||||| ||||| || ||||||||||| || || || Sbjct 50171 AACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAAATTTT 50230 Query 169211 TGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTAT 169270 |||| | || || ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 50231 TGGTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 50290 Query 169271 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 169330 ||| | |||| ||| | || || | | ||| | ||| | ||| | ||||| ||||| Sbjct 50291 TGGTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCTTTAAACTTACGTGCATATGA 50350 Query 169331 CTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAA 169390 ||||| || ||||| || | || || |||||||| || || || || ||||| || || Sbjct 50351 TTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTATACAAA 50410 Query 169391 GAA-CATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATG 169449 || ||| | || | |||||| |||| || ||| | || || ||||| ||||||| Sbjct 50411 AAATCAT-TTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCCTCATG 50469 Query 169450 AGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 | || || || ||||| ||||| ||| | || || || || || || Sbjct 50470 AAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCT 50515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560601833312000