Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq880 756 0.0 >seq880 Length=74269 Score = 756 bits (838), Expect = 0.0 Identities = 761/986 (77%), Gaps = 2/986 (0%) Strand=Plus/Minus Query 181794 TTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTG 181853 || || |||||||| || || | || ||| | || |||||||||||||||| | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 181854 ATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 181912 |||||||| ||||| || | ||||| | | || |||||| | || || | || || || Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTA-CAGTATTCATCATCGCATTTATCGCTGCTCC 61206 Query 181913 TCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAA 181972 ||| || |||||||| |||||||| || || || |||||||| | | || |||||||| Sbjct 61205 TCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAA 61146 Query 181973 CATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAAT 182032 ||||||||| ||||| ||||| ||| | || ||||| |||||| | || ||||||||||| Sbjct 61145 CATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAAT 61086 Query 182033 CTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGT 182092 |||||||||||| || | ||||||||| | || ||||||||||||| |||| | ||||| Sbjct 61085 CTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 61026 Query 182093 TTTCCACTTCCTGATCGGCATCTACGCCTACATGGGACGTGAGTGGGAACTTTCTTACCG 182152 | || ||| | | || | | | |||||||| |||||||||||| | |||| ||| Sbjct 61025 ATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 60966 Query 182153 CTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGC 182212 |||||||||||||| |||||| ||| || ||||| || ||||| |||||||| | || Sbjct 60965 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 60906 Query 182213 TGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAAT 182272 ||||||| | | || || ||||||||||||| ||||| |||| ||||| | || || Sbjct 60905 TGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTAT 60846 Query 182273 CTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCC 182332 |||||| |||||||||| ||| | || |||||||||||||||||||| | ||||| || Sbjct 60845 CTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCC 60786 Query 182333 CTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGG 182392 ||||| ||||| ||||| || |||||||| ||||||||| | || || |||||||| Sbjct 60785 ATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 60726 Query 182393 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGG 182452 ||| | || || |||||| | ||||||| || ||||| | || ||| ||| | || Sbjct 60725 TTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGG 60666 Query 182453 TTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGG 182512 |||||| || |||||||||||||| || || |||||||| || || ||||| ||||| || Sbjct 60665 TTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGG 60606 Query 182513 TCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 182572 |||||| |||||||||||||| ||||| |||||||| ||||| || ||||||||| | || Sbjct 60605 TCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGC 60546 Query 182573 TGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAA 182632 ||| ||||| || ||||| || |||||||| || | ||| | || || |||||||| || Sbjct 60545 TGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAA 60486 Query 182633 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACAC 182692 | | || ||||||||||||||||| || | | ||| || |||||||| | ||||| Sbjct 60485 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 60426 Query 182693 TTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 182752 |||||| ||| | | ||||||||| | ||||| ||||| |||||||| | || || Sbjct 60425 TTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATGC 60366 Query 182753 ACACAACTTCCCACTAGATCTTGCTG 182778 |||||||| ||||| ||| | |||| Sbjct 60365 TCACAACTTTCCACTTGATTTAGCTG 60340 Score = 569 bits (630), Expect = 2e-157 Identities = 742/1016 (73%), Gaps = 14/1016 (1%) Strand=Plus/Plus Query 183191 TTGATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTC 183250 ||||||||||| || || ||||| || || ||||| || |||||||| | || | Sbjct 49513 TTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGTTTATTATTAT 49572 Query 183251 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTT 183310 | || ||||||| | || | || || ||| | ||||| | | |||||||| | Sbjct 49573 TACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCAT 49632 Query 183311 GGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCT 183369 ||||||| ||||| | |||||||| | | | |||||| ||| |||||| || || || Sbjct 49633 GGTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAA-TTTCTTAACAGCTGCA 49691 Query 183370 GTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCT 183429 || || || ||||| | |||||||||||| | | ||| | ||||| || || | Sbjct 49692 GTTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCAGAAGCA 49751 Query 183430 CAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCAC 183489 ||||| |||||| || ||||| ||| | || || | |||| |||||| ||| | || Sbjct 49752 CAAGGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATTACAT 49811 Query 183490 GGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGT 183549 ||| | |||||| | |||||||| ||| | || || ||||| |||| || | | Sbjct 49812 GGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGTTCAGTAAAA 49871 Query 183550 ATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTC 183609 || ||||| || || || || || ||||| | || ||||| ||||| || || ||| Sbjct 49872 ATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCAGTTTTC 49931 Query 183610 CTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCA 183669 | |||||||| | ||||| ||| |||||||||||||| ||||| || || || ||| Sbjct 49932 TTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTTGCCGCA 49991 Query 183670 ATCTTTAGAT---TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTC 183726 ||||| ||| ||||||| ||| || |||||||| |||||||| |||||||| ||| Sbjct 49992 ATCTTCCGATTTATCCTATTCTTC---CAAGGTTTCCATAACTGGACTTTAAACCCATTC 50048 Query 183727 CATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTC 183786 ||||||||||| || |||||| | |||| | ||| |||| ||||||||||||||| Sbjct 50049 CATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGTGCA 50108 Query 183787 ACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGAT 183846 || ||||| || ||||| | ||||||||| || ||||| |||||| |||||| | Sbjct 50109 ACTGTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTTAAC 50168 Query 183847 TCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATC 183906 | ||||||| ||||| || ||||| ||||| || ||||||||||||||||||||||| Sbjct 50169 CCAACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAAATT 50228 Query 183907 TTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTC 183966 || || || || ||| ||||| |||||||| || ||||||||||| ||||| || || Sbjct 50229 TTTGGTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTA 50288 Query 183967 ATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTT-CGTGCTTA 184025 | ||| | ||| | | | |||||| | | || | ||| |||| ||| ||||| || Sbjct 50289 ACTGGTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCT-TTAAACTTACGTGCATA 50347 Query 184026 TGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACAC 184085 |||||||||| |||||| || | || || |||||||| ||||| || || ||||| || Sbjct 50348 TGATTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTATAC 50407 Query 184086 AAAGAA-CATACTTCTTA-ATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCA 184143 ||| || ||| || ||| ||||||| | || || ||| | || || ||||| || Sbjct 50408 AAAAAATCAT--TTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCCT 50465 Query 184144 CATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 ||||| || || |||| ||||||||||||||||| | || || ||||||| ||| Sbjct 50466 CATGAAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCTTTAATG 50521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611689271344000