Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq880 659 0.0 >seq880 Length=74269 Score = 659 bits (730), Expect = 0.0 Identities = 748/997 (75%), Gaps = 22/997 (2%) Strand=Plus/Minus Query 164763 tttttGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCT 164822 |||||| |||||||| ||| ||| | |||||| | || |||||||||| ||||| | Sbjct 61325 TTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 61266 Query 164823 TATGATCCC----CTGTTTGCTCGCCGCTACAATTTGTTTTATTACTGCATTCATCGCTG 164878 |||||||| || || || || ||||| | | | || | ||||| ||||||| Sbjct 61265 AATGATCCCTACTCTATTAACT-GCAACTACAGTAT---TCATCATCGCATTTATCGCTG 61210 Query 164879 CTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTA 164938 |||| || || || || |||||||| ||||| ||||| | ||||| || | ||||||| Sbjct 61209 CTCCTCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTA 61150 Query 164939 ACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATC 164998 ||||||||||||| ||||| || ||||| |||| ||||| || || | || ||||| | Sbjct 61149 ACAACATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACC 61090 Query 164999 CTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGG 165058 | || ||||||||||| | | ||||| ||||| |||||||||||||||||||| || | Sbjct 61089 CAATCTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAG 61030 Query 165059 TTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTT 165118 |||| | || ||| || | |||||| || ||||||||||||||||||||| | |||| Sbjct 61029 TTGTATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTT 60970 Query 165119 ACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTG 165178 ||| | ||||||||||| ||||| || || || ||||| || ||||| ||| Sbjct 60969 TCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTA 60910 Query 165179 CCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTG 165238 | || || ||| | | || || |||||||||| |||||||||||||||||| | | Sbjct 60909 CAGCTGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAG 60850 Query 165239 GTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGC 165298 ||||||| ||||| || |||| ||| | || |||||||| || || ||||| | |||| Sbjct 60849 GTATCTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGC 60790 Query 165299 ATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGC 165358 | || ||||| ||| | || |||||||| ||||| ||||| || | ||||| ||||||| Sbjct 60789 ACCCATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGC 60730 Query 165359 ATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAG--AA 165416 | || ||||| ||||| ||| | |||| || || |||||| | || |||| || Sbjct 60729 ACGGTTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAA--AACGAATCAGCTAA 60672 Query 165417 CTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTA 165476 | | ||||| || ||||| ||||||||||| || || |||||||| ||||| || || || Sbjct 60671 CGAAGGTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTA 60612 Query 165477 CTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTT 165536 ||| |||||| | || ||||||||||| || || ||||| || ||||| | |||||||| Sbjct 60611 CTTTGGTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTT 60552 Query 165537 CCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGC 165596 | | || || ||||| ||||||||||| |||||||||||| | ||| || || ||||| Sbjct 60551 CTTAGCTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGC 60492 Query 165597 ATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATC-- 165654 ||| ||| | || ||||||||||||||||| || |||| ||| || |||| || Sbjct 60491 ATTTAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGAT--TC---ACAAGGTCGT 60437 Query 165655 ---ATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCAT 165711 ||| ||||||||||| || | ||||||||| | ||||| ||||| |||||| Sbjct 60436 GTAATCAACACTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCAT 60377 Query 165712 GAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCTG 165748 || | || ||||||||||| || || || | |||| Sbjct 60376 GAAAGAAATGCTCACAACTTTCCACTTGATTTAGCTG 60340 Score = 531 bits (588), Expect = 6e-146 Identities = 733/1013 (72%), Gaps = 12/1013 (1%) Strand=Plus/Plus Query 166171 TTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTC 166230 |||| ||||||||| || ||||||||||| ||||| ||||||||||| || || || Sbjct 49513 TTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGT-TTATTATTA 49571 Query 166231 TTCCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGT 166289 || || ||||||| | || | || || ||| | ||||| | ||| || || || Sbjct 49572 TTACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCA 49631 Query 166290 TGGTATACTCATGGACTCGCAAG--CAGTTATCTGGAGGGTGCAAACTTTCTTA-CTGCG 166346 |||||||| ||||| | || || || | | ||| || || ||||||| | || Sbjct 49632 TGGTATACACATGGTTTAGCTTCTTCATTTTTA-GAAGGTTGTAA--TTTCTTAACAGCT 49688 Query 166347 GCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAG 166406 ||||||||||| || ||| || |||||||||||| || | | | ||||| || || Sbjct 49689 GCAGTTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCAGAA 49748 Query 166407 GCTCAAGGGGA-TTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCT 166465 || ||||| || ||| || | ||||| ||| | || || | ||| | |||||||| | Sbjct 49749 GCACAAGGCGACTTTACTC-GTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATT 49807 Query 166466 CCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCGTCTAGT 166525 || ||| | ||||| |||||||||| ||| | || || ||||| || || ||| ||| Sbjct 49808 ACATGGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGTTCAGT 49867 Query 166526 AGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGT 166585 | |||||||| || || ||||||||||| || | || ||||| || ||||| || Sbjct 49868 AAAAATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCAGT 49927 Query 166586 CTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTC 166645 || | ||||| ||| | |||||||| | ||||| || || ||| ||| || || | Sbjct 49928 TTTCTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTTGC 49987 Query 166646 AGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATT 166705 |||||||||||||| |||| ||| | ||||| ||||| |||||||| | |||||||| Sbjct 49988 CGCAATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATT 50047 Query 166706 TCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGT 166765 ||||||||||||||||| ||| || | |||| || || || | ||| |||||||||| Sbjct 50048 CCATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGTGC 50107 Query 166766 TACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGA 166825 || ||||| ||||| | | | |||||||||| |||||||| ||| ||||| | Sbjct 50108 AACTGTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTTAA 50167 Query 166826 CTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGAT 166885 | | ||||||| |||||||| ||||||||||| || || || || | ||||| || || Sbjct 50168 CCCAACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAAAT 50227 Query 166886 CTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGT 166945 || ||| | || ||| ||||| | ||||| |||||||||||| | ||||| || || Sbjct 50228 TTTTGGTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGT 50287 Query 166946 TATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTA 167005 | ||| | |||| ||| | || || | | ||| | ||| | ||| | ||||| || Sbjct 50288 AACTGGTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCTTTAAACTTACGTGCATA 50347 Query 167006 TGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATAC 167065 ||| ||||| || |||||| | | || || || |||||||| || ||||| |||||||| Sbjct 50348 TGATTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTATAC 50407 Query 167066 CAAGAA-CATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTC 167124 || || |||| | || |||| ||| | || |||||||||| || ||||| |||| Sbjct 50408 AAAAAATCATT-TATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCCTC 50466 Query 167125 ATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 |||| | || |||||||| || ||||| | || | || |||||||| ||| Sbjct 50467 ATGAAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCTTTAA 50519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563654599731200