Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq880 735 0.0 >seq880 Length=74269 Score = 735 bits (814), Expect = 0.0 Identities = 758/992 (76%), Gaps = 0/992 (0%) Strand=Plus/Minus Query 169681 TGGCCTCAGTTTACTGATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTC 169740 ||| ||| ||| ||| |||||||| ||||| | ||||| | || | |||||||| Sbjct 61333 TGGGCTCGTTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTT 61274 Query 169741 GGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATC 169800 ||||| || |||||||| ||||||| | ||| | || || ||| | || || ||| Sbjct 61273 GGTGTATTAATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATC 61214 Query 169801 GCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTAT 169860 || ||||| || || || |||||||| ||| | || ||||| | |||||||| | || Sbjct 61213 GCTGCTCCTCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATAC 61154 Query 169861 GGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTC 169920 ||||||||||||||||| ||||| ||||||||| |||||||||| || ||| | || ||| Sbjct 61153 GGTAACAACATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTC 61094 Query 169921 TATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAA 169980 || || || |||||||| || || ||||||||||||| || |||||||||||||| ||| Sbjct 61093 TACCCAATCTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAA 61034 Query 169981 TTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTA 170040 |||||| | | || ||| | | || | | | | ||||||||| | |||||||| || Sbjct 61033 TTAGTTGTATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTA 60974 Query 170041 TCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCA 170100 || | |||||||||||||||||| |||||| ||| || || || || ||||| | ||| Sbjct 60973 TCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCA 60914 Query 170101 GCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCT 170160 || ||||||||| | | || || ||||||| || |||||||| || || ||||| Sbjct 60913 GCTACAGCTGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCA 60854 Query 170161 CTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTT 170220 ||||||||||||||||||| ||||||||| | ||||||||||| ||||||||||| | Sbjct 60853 TTAGGTATCTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTA 60794 Query 170221 ATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCA 170280 |||||||||||||||||| ||| ||||||||| | || || || || | |||||||| Sbjct 60793 ATGCACCCATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCT 60734 Query 170281 ATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAG 170340 |||||||||||||||||||| ||||| ||||| | || || || || ||||| ||| Sbjct 60733 ATGCACGGTTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCT 60674 Query 170341 AACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGA 170400 ||| | || |||||||| || |||||||||||||| |||||||| || || || ||||| Sbjct 60673 AACGAAGGTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGT 60614 Query 170401 TACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTC 170460 ||||||||| | | ||||||||||| ||| |||||||| |||| | |||||| Sbjct 60613 TACTTTGGTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTC 60554 Query 170461 TTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATG 170520 ||| | ||| | | || ||||| | || ||||| ||| | | ||||||| || ||| Sbjct 60553 TTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATG 60494 Query 170521 GCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTA 170580 ||||||||| | ||||| || ||||||||||| ||| | |||||| | ||| ||| Sbjct 60493 GCATTTAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTA 60434 Query 170581 GTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAG 170640 | || ||||| || || ||||| | || ||| ||||||| |||||||||||||| Sbjct 60433 ATCAACACTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAA 60374 Query 170641 CGTAATGCACACAACTTCCCACTTGACTTGGC 170672 | ||||| |||||||| |||||||| || || Sbjct 60373 AGAAATGCTCACAACTTTCCACTTGATTTAGC 60342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582841588672000