Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq221 134 3e-26 seq354 104 5e-17 >seq221 Length=83180 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || |||||||||||||| || | || | |||||| || ||||| Sbjct 43873 GTGCAGTGTAGACTCCTTCTGAATATTGTAATCTGCCAATGTACGCCCATCCTCAAGCTG 43932 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| |||| || || || || || || || || || || |||||||| Sbjct 43933 CTTCCCAGCGAAGATCAGTCTCTGCTGATCAGGCGGGATCCCCTCCTTATCCTGAATTTT 43992 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| |||||||| || || ||| || || || ||||| | ||||| || || Sbjct 43993 CGACTTGACATTCTCAATCGTATCTGAAGACTCGACCTCGAGGGTTATGGTCTTCCCAGT 44052 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| | ||||| Sbjct 44053 CAGTGTTTTGACGAAAATCTGCAT 44076 >seq354 Length=2136 Score = 104 bits (114), Expect = 5e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || || || |||||||| || | || | |||||| ||||||||||| || Sbjct 1966 GTAGACTCCTTCTGGATGTTGTAATCTGCCAACGTGCGCCCATCCTCGAGCTGCTTGCCA 2025 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| || || || || || || ||||| ||||| ||||| ||||| || |||| Sbjct 2026 GCAAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGAATCTTCGACTTG 2085 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 || || ||||| || || || || || ||||| || | ||||| || Sbjct 2086 ACATTTTCAATTGTATCAGACGACTCTACCTCAAGCGTGATGGTCTTGCC 2135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109469090594960