Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq880 722 0.0 >seq880 Length=74269 Score = 722 bits (800), Expect = 0.0 Identities = 745/972 (77%), Gaps = 2/972 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 || ||||| || || || | ||| ||||| ||||| ||||| | ||||| |||| Sbjct 60354 GGAAAGTTGTGAGCATTTCTTTCATGCATTACTTCAATACCTAAGTTAGCACGGTTAACA 60413 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| || |||| ||||| ||| ||| |||| || |||||||| Sbjct 60414 ATATCAGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTGATTGGTTGAAGTTG 60473 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| | ||||||||||| || || ||| | ||||| |||||||| ||||| Sbjct 60474 AAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCAACT 60533 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 |||||||||||||| ||||| ||||| | |||||| ||||| || ||||| || ||| Sbjct 60534 ACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTAAATGAAGCGTATTGG 60593 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | |||||| ||||| || |||||||| || || || |||||||| ||||||||| Sbjct 60594 AAGATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGA 60653 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 || || |||||||| | ||| ||| | ||||| |||||||| ||||||| |||||| Sbjct 60654 CCAAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTAGTTTCACGGATTAATGAAGAA 60713 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || ||||||||||| ||||| || ||||||| | ||||| |||||||||||||| || Sbjct 60714 GTTACAAGTGAACCGTGCATAGCTGAGAATAATGAACCACCAAATACACCAGCAACACCT 60773 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||| || || || ||||| | |||||| || || || ||||| ||||||||| ||||| Sbjct 60774 AACATATGGAATGGGTGCATTAAGATGTTGTGCTCAGCTTGGAATACAAGCATGAAGTTG 60833 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || ||||||||||| | |||||| |||||||||||||||||||| |||| || || Sbjct 60834 AATGTACCTGAGATACCTAATGGCATACCATCAGAGAAAGAACCTTGACCGATTGGGTAA 60893 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||||||||| | || || |||||||| || |||||||||||| |||||||||| Sbjct 60894 ATGATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAGTAAGCAACAGCGATCCATGGA 60953 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| | ||| | || | |||||| |||||||||||||||| | || |||| | Sbjct 60954 CGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGTAAGAACATACACCTAAG 61013 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | ||| ||| | ||||| | ||| ||||| ||||| || |||| ||| || || | | Sbjct 61014 AAGAAATGACATACAACTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGAA 61073 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || || |||||||||| |||||| || || || | |||||| || ||| Sbjct 61074 GCAGCTTCCCAGATTGGGTAGAAATGTAAACCAATCGCGTTTGAAGTTGGAACAACCGCA 61133 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 || || ||||||||||| ||||| | | ||||||| || |||||||||||||| || Sbjct 61134 CCTGAGATGATGTTGTTACCGTATAATAATGAACCAGAAACAGGCTCACGGATACCATCG 61193 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||||||||| || ||| | | ||||| |||||||| || | ||| |||| | ||| Sbjct 61194 ATATCAACTGGAGGAGCAGCGATAAATGCGATGATGAATACTG-TAGTTGCAGTTAATAG 61252 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 ||| || ||||| | ||||||||||| | || | |||||| | |||| || || Sbjct 61253 AGTAGGGATCATTAATACACCAAACCAACCGATGTATAAACGGTTTTCAGTGCTAGTTAC 61312 Query 84944 CCAATCACAGAA 84955 ||| ||||| || Sbjct 61313 CCACTCACAAAA 61324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571267315990400