Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq232 196 5e-45 seq457 159 4e-34 >seq232 Length=44964 Score = 196 bits (216), Expect = 5e-45 Identities = 593/905 (66%), Gaps = 17/905 (2%) Strand=Plus/Minus Query 18652 GAATTCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTT 18711 |||||||| ||||| ||||| || ||| ||||||| || || |||||||| || ||| Sbjct 12071 GAATTCATCACTCCAGCCTTTTGGTACTCGCCAACTCTCTTCTCGAAGAAATTTGTCTTT 12012 Query 18712 CCCTCTAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttG 18771 |||| || || || |||||| |||| |||||||| ||||| || | || | Sbjct 12011 CCCTGCAAAGAAATCAGTTCCATCCAATCGAATGGATTGGCAACATTGTACACCTTGTCA 11952 Query 18772 AATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATA-T 18829 || | | | || |||||||| |||||||||| ||| || |||| ||| | | Sbjct 11951 TTCCCCAGGGCAACCAGAAGTCTATCAGCTACAAATTCAATGTACTGTGA-CATGAGCCT 11893 Query 18830 CACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATAT 18889 | | ||||| || || | | ||||| || || || || ||| || | |||| | Sbjct 11892 CGCG-TTCATGCCGATCAGGTCGACAGGCAGGGCGTCGCAAATAAACTCCTTCTCTAATT 11834 Query 18890 TTACTGCCTCTGATATAATAGATACAACTCTATC-TTCATTAGGAGGGTATAGA---AGA 18945 || || | | | ||| | | | ||| || || | || | | | || || Sbjct 11833 CAACGGCGTTCGTCACGATATCTGCGATTCTCTCCTTGCTGAGCTTGTTGTTGAGCAAGG 11774 Query 18946 TGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCA 19005 || | || | ||||||||||| || || ||||| || | | ||||| || Sbjct 11773 AGT----AGATGAGGCATGCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCG 11718 Query 19006 TTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAAT 19065 || || ||||| || || || | ||| |||| ||||| | |||| | || | | || Sbjct 11717 TTGGAGAATGTCAATCCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGGCACAGAAG 11658 Query 19066 GATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA 19125 ||||| || ||||| || ||||| || || || ||||| | || ||| | | | Sbjct 11657 GATCCGGAGAAGAAAATTCCTTCAACGCAGGCGAATGCAACCAATCGCTCTGCGAA---A 11601 Query 19126 GCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATT 19185 | ||| | | ||||||| ||| |||||||| |||||||| || || ||| | | Sbjct 11600 GAATCGCTGGACTCAATCCATCTCATGGCCCAATCTGCCTTCTTCTTCACCACTGGTACT 11541 Query 19186 GTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATC 19245 ||||| || | || || || | | ||| | | ||| || | |||| || | | Sbjct 11540 GTCTCGATGGCATGGAACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTCAAGC 11481 Query 19246 AATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACAT 19305 | | ||| ||||| || ||||||||| || || || || || ||||| |||||| | Sbjct 11480 AGGAGACTATACATCTCGCTATGAATATTCTCAATGGCGATTTGGAATCCATAAAAAGCT 11421 Query 19306 CTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATT 19365 || || |||| ||||| || || | |||||| | | ||||||| ||||| || || Sbjct 11420 CTGGCCTCTGGGATCTGCACCTCCTTCAAAAATCGTACCCCCAAATTCTCATTTACGATG 11361 Query 19366 CCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT 19425 |||||| || ||||| ||||| | ||||| || |||||| | || | || || Sbjct 11360 CCATCAGATGCAGCAAAGAATGCAAGCACATGAGAGATGAAATGTCTCTCGT-TGTCATT 11302 Query 19426 -AATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGA 19484 ||| | ||| | || || ||| | ||| || |||||| ||||||| || || Sbjct 11301 CAATCCTTCCCAGTGCTTGATGTCTCCTCCCAGATCAACCTCTTCAGCTGTCCAGAAGGA 11242 Query 19485 AGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 ||||||||| || || ||||| | ||| || ||| ||| | || || || | || || Sbjct 11241 AGCCTCTGCCTTCTTGTACATTTCCCAGATTTCATTATACTTGATCGGGAACAAGACGAA 11182 Query 19545 TCTAT 19549 || || Sbjct 11181 TCGAT 11177 >seq457 Length=513114 Score = 159 bits (176), Expect = 4e-34 Identities = 428/649 (66%), Gaps = 4/649 (1%) Strand=Plus/Plus Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 ||||| |||||| ||||| | ||| ||||| || | || || || || |||| Sbjct 208767 CCAGGGGCTTCATTTGGACAAAACAAGGACCACTCTCCTCCAGCTTCAACCCTTTGCATA 208826 Query 48216 AATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCC 48274 || | |||||| ||||| | | | || || ||||| || | || |||||| ||||| Sbjct 208827 AAGAGATCTGGGATCCACA-ACCCGTAGAACAAATCTCTTGCCCTCGCTTCTTCTTTGCC 208885 Query 48275 ACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATAT 48334 |||| | | | |||||| |||| | |||||||| ||||| || || || || || Sbjct 208886 GTGATTCTTCCTCAATTCAAGCCAGTCGAAAATATCAGCGTGCCAAGGCTCCAAGTACAT 208945 Query 48335 TGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATA 48394 || | | ||| || || ||||| ||||| | ||||||||| || | || | Sbjct 208946 GGCAAACGCTCCTTTTCTCTTCCCCCCTCCCTGATCAACATATCTGGCCGTGTCATTGAA 209005 Query 48395 AACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCC 48454 || | | ||| || ||||||||||| || | ||||| ||||| ||||||| || Sbjct 209006 CACACGGAGCATAGGTACAATACCATTCGAAGTTCCATTTGTTCCACGAATATAAGAACC 209065 Query 48455 ACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514 | | ||||| |||||| || || | ||| || || ||||| | || || || ||| Sbjct 209066 AGTCGCTCTGATATTATGCATAGACAGACCGATGCCCCCTGCACTCTTGGAGATGCAAGC 209125 Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAA 48574 |||| || || || |||||||| ||||| |||||||||| |||| | | ||| Sbjct 209126 ACACTCCTTCAGAGTGTCATAAATGCCTTCAATACTATCATTCTTCATGCAGATCAAAAA 209185 Query 48575 ACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAAT 48634 || ||| | || || | ||| || | ||| || | |||||||| ||||| | Sbjct 209186 GCACGAAGAAAGCTGAGGGCGTGGAGTACCGGCATTGAACAGAGTTGGAGAGGCATGCGT 209245 Query 48635 AAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCC-CATTGAT 48693 |||||| ||| || | || | ||||| ||||| | | ||| |||| | | ||| | Sbjct 209246 GAACCATCTCTGAGACAGCAGGTGGTATGTCTCAATGGCTGCATCAATATTCTCCTTG-T 209304 Query 48694 GTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTA 48753 | || || | || || | ||| | ||| | || || || || || | ||| | Sbjct 209305 GGATTCCAACTGAAACTCTCATGAGCATGTGCTGTGGCCTCTCCACGACACGACCATTGA 209364 Query 48754 TTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 | | | |||||| |||| ||||| ||||||||||| | ||| Sbjct 209365 CCCTGAGCAAATATGAACGCTCCAGAGTTTTGAAACCAAAATAATCGTA 209413 Score = 127 bits (140), Expect = 2e-24 Identities = 361/546 (66%), Gaps = 9/546 (2%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 |||||| |||||| ||| | ||||| |||||| || | ||||| ||||| || || Sbjct 80585 ACATGCGAAATCAGTATGCAAGCCCTCATCTCTAGAGATGAGCTCATTCGAAAACGTCAA 80526 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 || ||||||| ||| || || ||||| | |||||| || || || |||||| Sbjct 80525 CCCTGGCATCAACAATCTCTTCTTCAACCAATAAATAGAACAGAAAGACCCCGAAAAGTG 80466 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTA-T 19138 || ||||| || |||||| || || | | ||| || ||| ||| | || | | Sbjct 80465 AATCCCTTCCACACATGCAAACGCCACCAACCGTTCAGCAAAACA--CAT--TGATGACT 80410 Query 19139 GAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAAT 19198 |||||||||| | ||||| |||||||||| ||||| |||| ||||| | || Sbjct 80409 GAATCCATTTGATCGCCCACGCAGCCTTCTTCCGCACACAAGGCACCGTCTCCACAGCCC 80350 Query 19199 TAAATAGATACATACGCTCATCTGTATCTTTAACATA-TGCATCTATCAATAAACTGTAC 19257 |||| | || |||| | | |||| | || ||| ||| || | ||| || | ||| Sbjct 80349 TAAACAAATGATCCCGCTGCTTTTTATCATCAATATACTGC-TCCAACAACAACCCATAC 80291 Query 19258 ATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTT 19317 ||||| || | ||| ||||| ||| |||||| || ||||| | |||||| | Sbjct 80290 ATTTCACTGTGCACATTCTCTATCGCCGACTGAAACCCATAAAAGGCCCGTGCTTCAGGA 80231 Query 19318 ATCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGC 19376 ||||| | || | || ||| || | ||| ||| || || || ||||| || Sbjct 80230 ATCTGAATCTC-TTGCATAAACCTCACCGCCAGATTCTCCAACACAATACCATCCGATGC 80172 Query 19377 TGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCA 19436 ||||||||||| || |||| ||||||| || || || | | || || ||| Sbjct 80171 CGCAAAAAATGCCAACACATAACTAATAAAGTGCTTCTCCGCATCATTCAAACGATCCCA 80112 Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 ||| |||||| || ||||| || || || || ||||| || |||| ||| | Sbjct 80111 ATCCCGCTTATCTTGTGACAAATCCACCTCCTCCACAGTCCAGTAACTGGCCTGTGCCAT 80052 Query 19497 TTTATA 19502 ||| || Sbjct 80051 TTTGTA 80046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102616803200