Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq362 185 7e-41 seq191 149 5e-30 seq189 136 3e-26 seq429 113 4e-19 seq779 104 2e-16 seq221 91.5 1e-12 >seq362 Length=50271 Score = 185 bits (204), Expect = 7e-41 Identities = 370/541 (68%), Gaps = 13/541 (2%) Strand=Plus/Plus Query 368506 AATAATAATTCTAAAATAAATTGGATGCCATCTAATATTGGAACAAAA-CATTTTGATAA 368564 || |||||| || | | ||||||| |||||||| || | | | | || | || |||| Sbjct 19813 AAAAATAATGCTCAGACAAATTGGGTGCCATCTTATGT-GAAGGAGAAGCGATTCCATAA 19871 Query 368565 TTGGCTCCAAAATTCAGTTGATTGGTGTATTTCAAGAAGTAGGTTTTGGGGAACTCCAAT 368624 |||||| | | | |||||| ||||| |||| || || ||||| || ||||| Sbjct 19872 TTGGCTGGAGGGTGCTCGAGATTGGGCGATTTCTAGAACAAGATTCTGGGGCACGCCAAT 19931 Query 368625 TCCAGTATGGAAATCTGATGATGGTGAAGAAATTGTTTGTATAGGTTCAATTAAAGAATT 368684 |||| | |||| ||||||||| |||||||||||| ||| || || | |||| | Sbjct 19932 TCCAATCTGGATGAGTGATGATGGCGAAGAAATTGTTGTTATCGGATCCAAACAAGAGCT 19991 Query 368685 GCAAGAATTATCTGGTGTGCAAAATATTAGTGATTTACATATTGATAAAATTGATCACAT 368744 ||||| | | ||| ||| || |||||| |||| || ||||| ||||| Sbjct 19992 CGAAGAACTCACGGGTAC---AAAGGTTGATGATTTGCATAGACATTTCATTGA-CACAT 20047 Query 368745 TAA-AATTCCATCAAAGAAAGGAAAAGGTTTATTGTCTCGAGTTGAAGGAGTTTTGGATT 368803 | | ||||||||||||| |||| || || | || | ||||||| || || |||| Sbjct 20048 TGACAATTCCATCAAAGCAAGGCAAGGGCGAACTGAAAAGGGTTGAAGATGTCTTTGATT 20107 Query 368804 GCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATTTGATAACGCAA 368863 |||||||||||||||| || ||||| |||| || ||||||||| ||||| || || Sbjct 20108 GCTGGTTTGAATCAGGATCAATGCCGTATGCACAGGCACATTATCCTTTTGAGAA-TCAG 20166 Query 368864 AATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAACAGAATCAATTGATCAAA 368923 ||| || || || | | | | ||| ||||| |||| | ||||||| Sbjct 20167 GATAAATT-----CGAAAACAACTTTCCAGGTGACTTTGTTGCAGAGGGCCTCGATCAAA 20221 Query 368924 CACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCGATAAACCGGCTT 368983 ||||||| ||||| || ||| | | || ||||| || || | ||||||||||| || | Sbjct 20222 CACGTGGCTGGTTCTACACCATGATGGTTTTATCGACTGCATTGTTCGATAAACCTGCAT 20281 Query 368984 TTAAAAATGTAATAGTAACTGGTATTGTTAATGCATCTGATGGTCAAAAGATGTCAAAAA 369043 | ||||| | || | |||| | || ||||| |||||| |||||||| |||| Sbjct 20282 TCAAAAACCTGGTATGCAATGGTCTCGTGCTGGCATCAGATGGTAAAAAGATGAGTAAAA 20341 Query 369044 G 369044 | Sbjct 20342 G 20342 >seq191 Length=305721 Score = 149 bits (164), Expect = 5e-30 Identities = 361/539 (67%), Gaps = 12/539 (2%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | ||||| || ||| ||||||||| || | | ||||||||||| Sbjct 43965 ATTGGAATCGATCTTGGAACGACCTATTCTTGTGTTGGAGTGTATAAGAATGGTAAAGTC 43906 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || |||||||| ||||| || || |||| ||||| || || || | || || || Sbjct 43905 GAGATCATTGCCAACGATCAGGGAAATAGAATCACTCCCTCGTACGTGGCGTTTACTGAC 43846 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 |||| | ||| |||| || || ||||| |||| ||||| || || || | ||| Sbjct 43845 TCTGAGCGTTTGATTGGAGACGCTGCAAAGAATCAGGCCACGTCCAACCCAACTAGAACT 43786 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | | ||||| || | || |||||||| | || || ||| | || ||| || Sbjct 43785 GTGTATGATGTGAAGAGATTGATTGGAAGGAACTTCAAGGATGCAGAGGTGCAGAAGGAC 43726 Query 550235 ATGAAGCATTGGCCT-TTCCAA-ATTGTT---AATGTTTCTGGAAAACCTTATATTGAAG 550289 | | | |||| | || ||| ||||| || || ||| || ||| || | | Sbjct 43725 AAGGAT--TTGGTGTCTTACAAGATTGTGGACAACAAGTC---AAAGCCCTATGTT-AGG 43672 Query 550290 CTACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTA 550348 | | |||| | | || | |||||| || || | ||||| | ||||| || Sbjct 43671 GTGGACGTGAACAAGGAGGACAAGACATTTTCGCCCGAGGAGATTTCTGCCATGGTGTTG 43612 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATA 550408 | || ||||| | || ||| || | | | ||| | ||||| | | |||| || | Sbjct 43611 ACAAAGATGAAGGAGACTGCCGAAGCGTATCTGGGTAAGGAAGTCAAGCATGCTGTGGTG 43552 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| |||||||| |||||||| |||| | || || || || ||||| || |||| Sbjct 43551 ACTGTGCCAGCATACTTTAATGATGCACAGAGACAGGCCACCAAGGATGCAGGTACTATT 43492 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||||| | || || | ||||||||||| || |||||||| |||||| |||| ||||| Sbjct 43491 GCTGGTTTGAACGTGGTGCGTATTATCAACGAGCCTACTGCGGCTGCAATTGCCTATGG 43433 >seq189 Length=39166 Score = 136 bits (150), Expect = 3e-26 Identities = 353/533 (66%), Gaps = 9/533 (2%) Strand=Plus/Plus Query 550001 ATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATT 550060 || ||||| ||||| || || |||||||| || ||||| |||| | ||| || ||| Sbjct 5434 ATTGATTTGGGAACAACCTACTCCTGTGTTGGAGTGTGGCAGAATGACAGAGTGGAGATT 5493 Query 550061 ATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAA 550120 ||| | ||||| || |||||||||||||| ||||| |||||| | ||||| || || || Sbjct 5494 ATTCCAAATGAGCAGGGTAACAGAACTACCCCATCGTATGTTGCCTTCACCGATACCGAG 5553 Query 550121 CATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTT 550180 | ||| || || ||||| || || |||| | || || || ||| || | || Sbjct 5554 CGTTTGGTAGGAGATGCTGCCAAGAATCAGGTGGCTCTCAACCCACACAACTCTGTGTTC 5613 Query 550181 GATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAG 550240 ||||| || ||||| |||||| | | ||| |||| | |||| ||| ||||||| Sbjct 5614 GATGCCAAGCGTTTGATTGGACGCAAGTTTGATGAGCCAGCTGTCCAGCATGATATGAGC 5673 Query 550241 CATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAAGCTAC--TC 550295 || ||||| ||| | | || || | | ||||| || || || | | || | Sbjct 5674 CACTGGCCATTCAAGGTGGTCAAGGGTGCTGGAGACAAGCCAATGATCCAGGTGACCTAC 5733 Query 550296 ATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAA 550355 | ||| || | || ||| || ||||| | ||||| || ||||| | || | Sbjct 5734 AAGAACGA--AGAGAAGACATTCTCTCCAGAGGAGATTTCTTCCATGGTCCTTGGAAAGA 5791 Query 550356 TGAAACAAACAGCCAGTG-CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTA 550414 |||| | || ||| | | | | || ||| || | | || || | ||||| Sbjct 5792 TGAAGGAGGTAG-CAGAGACCTACCTCGGAGGAGAGGTGCAGCAGGCTGTGGTGACTGTG 5850 Query 550415 CCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGA 550474 ||||| || || || || || || | || || || || ||||| || ||||||||| Sbjct 5851 CCAGCCTACTTCAACGATTCTCAGAGACAGGCAACCAAGGATGCCGGTGTGATTGCTGGA 5910 Query 550475 CTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || | || ||||||||||| || || || || || || || | || ||||| Sbjct 5911 CTCGAGGTGCTTCGTATTATTAACGAGCCAACAGCAGCCGCTATCGCCTATGG 5963 Score = 107 bits (118), Expect = 2e-17 Identities = 353/541 (65%), Gaps = 22/541 (4%) Strand=Plus/Plus Query 552060 ATTGAACCAGTAGAACAA-GTTTTAAGAGATTCAAAGATTGATAA---ATCCAAAGTACA 552115 || || |||||||| || | || ||| ||||| ||||| || || ||| || || Sbjct 6358 ATGGACCCAGTAGAGAAATGCTTGAAG-GATTCCAAGATGGACAAGGGATCT---GTCCA 6413 Query 552116 TGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC 552175 || | || ||||| || ||||| || | ||||| || | | | |||| ||| Sbjct 6414 CGATGTGGTTCTTGTCGGAGGATCCACCCGTATTCCAAAGGTGCAGCAGTTGTTGAGTGA 6473 Query 552176 TTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGG 552235 || |||||||| || | || || | || | || ||||||||||||||||||||||| Sbjct 6474 CTACTTCAATGGAAAGGACTTGAACAAGAGCATCAACCCAGATGAGGCTGTTGCCTATGG 6533 Query 552236 TGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATAT--T 552293 || || | || ||||| || || |||| |||| | || || |||| || | | Sbjct 6534 AGCTGCTGTCCAGGCAGCCATCCTCACTGGTGAAACACACGAGAAGGTACAGGATCTCTT 6593 Query 552294 GTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACT 552353 || ||| ||||| ||||| || ||||||||| | || || | |||||| | ||||| Sbjct 6594 GTTGTTG--GATGTGACTCCACTGTCTCTTGGTCTTGAGACTGCTGGAGGAGTGATGACC 6651 Query 552354 AATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTAT 552413 | | ||| | | || || || ||||| ||||| | || || || || ||| Sbjct 6652 ACATTGATCCAGCGTAACACCACCATTCCAGCCAAAAAGGAACAGGTCTTCTCCACATAT 6711 Query 552414 TCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAA 552473 | ||||| || | | || || || | ||||||||||| | ||| Sbjct 6712 GCTGATAACCAGCCAGGAGTGCTTATCCAGGTGTTTGAAGGAGAGCGTGCCCGTACTTCT 6771 Query 552474 GATAATAATCAACTTGGT-----ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTG 552528 || || | ||||| | | || || | || || || || ||||| || |||| Sbjct 6772 GAGAA----CCACTTGCTCGGAAAGTTCGAACTCAG-TGGAATCCCACCTGCACCGCGTG 6826 Query 552529 GAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTG 552588 | || || || ||| || || || ||||| |||||||| || || ||||| ||| ||| Sbjct 6827 GTGTGCCACAGATTACCGTGACATTTGATATTGATGCCAACGGTATCTTGAACGTGTCTG 6886 Query 552589 C 552589 | Sbjct 6887 C 6887 >seq429 Length=364352 Score = 113 bits (124), Expect = 4e-19 Identities = 141/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 563286 TTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAAT 563345 ||||| || || ||||| || || || | |||||| | || ||||| || ||||| Sbjct 146998 TTTGG--ATGTTATAATCCGCCAGGGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAAT 146941 Query 563346 AAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTC 563405 | ||| ||||||||||| || || || |||||||| ||||| || || || ||| Sbjct 146940 CAATCTCTGCTGATCAGGTGGGATCCCCTCTTTATCCTGAATCTTCGACTTGACATTCTC 146881 Query 563406 AATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGA 563464 ||| ||||||| || ||| ||| ||||||| |||||| || || || |||||||||| Sbjct 146880 AATCGTATCAGATGACTCTAC-TTCCAGAGTAATAGTTTTTCCCGTCAGGGTTTTAACGA 146822 Query 563465 AAATTTGCAT 563474 |||| ||||| Sbjct 146821 AAATCTGCAT 146812 >seq779 Length=187291 Score = 104 bits (114), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| || |||||||| || || | || ||||| || |||||| Sbjct 104336 GCTGTGATTACTGTCCCAGCTTACTTTAATGATTCTCAGAGACAGGCTACGAAGGATGCT 104395 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || |||||||| | | || ||||||||||||||||| ||||||||||| | | Sbjct 104396 GGTAAGATTGCTGGTTTGGAAGTGCTTCGTATTATCAATGAGCCTACTGCTGCATCTTTG 104455 Query 550520 GCATATGGACTTGATAA 550536 || ||||| |||||||| Sbjct 104456 GCCTATGGTCTTGATAA 104472 >seq221 Length=83180 Score = 91.5 bits (100), Expect = 1e-12 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 |||||||||||| || | || | ||| ||||| || || || || || || ||||| Sbjct 43894 AATATTGTAATCTGCCAATGTACGCCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGTCT 43953 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 ||||||||||| || || || || ||||| |||||||| || || |||||| || Sbjct 43954 CTGCTGATCAGGCGGGATCCCCTCCTTATCCTGAATTTTCGACTTGACATTCTCAATCGT 44013 Query 563412 ATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470 ||| | || | | ||||| || | || || ||||| || ||||| |||||||| | Sbjct 44014 ATCTG-AAGACTCGACCTCGAGGGTTATGGTCTTCCCAGTCAGTGTTTTGACGAAAATCT 44072 Query 563471 GCAT 563474 |||| Sbjct 44073 GCAT 44076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029249461631200