Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq880 500 3e-137 >seq880 Length=74269 Score = 500 bits (554), Expect = 3e-137 Identities = 703/984 (71%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 |||||||||||||| || || ||||| |||||| | || | || ||||| || || | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 25862 ATGATACCCTGCT-TACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACC 25920 ||||| |||| || || | | || |||||| || || | || || ||||| || || Sbjct 61264 ATGAT-CCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCC 61206 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || || ||||| ||||| || |||||||| ||||| || || ||| | ||||| ||||| Sbjct 61205 TCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAA 61146 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 || || ||||| || || || || | || ||||| || || ||||||| ||||| || Sbjct 61145 CATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAAT 61086 Query 26041 CTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTAT 26100 ||||||||||| | | || |||||| ||||||| || || || || ||| | || | Sbjct 61085 CTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 61026 Query 26101 CTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAG 26160 | || ||||| |||| ||| | || || | |||||||| |||||| | | Sbjct 61025 ATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 60966 Query 26161 ACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGC 26220 |||| ||| | |||||||| |||||| || |||||||| | | |||||| || Sbjct 60965 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 60906 Query 26221 AGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTAT 26280 || ||| | |||| || |||| ||||| ||| |||||| ||||| | ||||| Sbjct 60905 TGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTAT 60846 Query 26281 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCC 26340 ||| ||||| || ||||| ||| | ||||||||||| || || || || | |||||||| Sbjct 60845 CTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCC 60786 Query 26341 ATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGG 26400 |||||||||| ||||||||||| || || ||||| | | ||| | ||||||||||| Sbjct 60785 ATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 60726 Query 26401 AAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGG 26460 | || ||||| ||| | || ||||| || || | | ||| || | || Sbjct 60725 TTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGG 60666 Query 26461 CTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 26520 || || ||||| ||||| ||||| || || || || || ||||| || || |||||||| Sbjct 60665 TTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGG 60606 Query 26521 GAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGC 26580 | ||||| || || || || ||||| ||| ||||| | || ||||| | || Sbjct 60605 TCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGC 60546 Query 26581 TACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAA 26640 | ||||||| || ||||| || ||| | || || | ||||| | || ||||||||||| Sbjct 60545 TGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAA 60486 Query 26641 CCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTAC 26700 | |||||||||| ||||| ||||| ||||| |||||| | || |||| || Sbjct 60485 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 60426 Query 26701 ATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGC 26760 ||||||||| | | ||||| |||||| | || ||||||| ||||| || | ||||| Sbjct 60425 TTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATGC 60366 Query 26761 TCATAACTTTCCACTTGACTTAGC 26784 ||| |||||||||||||| ||||| Sbjct 60365 TCACAACTTTCCACTTGATTTAGC 60342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146724866709120