Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq880 600 4e-167 >seq880 Length=74269 Score = 600 bits (664), Expect = 4e-167 Identities = 724/985 (74%), Gaps = 0/985 (0%) Strand=Plus/Plus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||| |||||||| |||||||| || || | |||||||| ||||| || ||||||| Sbjct 60342 GCTAAATCAAGTGGAAAGTTGTGAGCATTTCTTTCATGCATTACTTCAATACCTAAGTTA 60401 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 |||||||||| ||| ||||||||||| || || | || | ||||| || ||||| Sbjct 60402 GCACGGTTAACAATATCAGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTGAT 60461 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 || |||||||| || || || | ||||| |||||||| || | || | ||| || | | Sbjct 60462 TGGTTGAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTGAAC 60521 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAG 36212 || || | | || ||||||||||| | |||||| ||||| || || ||||| Sbjct 60522 CAAATACCAACTACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTAAAT 60581 Query 36213 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 36272 ||| || |||||||| | | |||||||| |||||||| || || ||||| || || Sbjct 60582 GAAGCGTATTGGAAGATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGTAAGTT 60641 Query 36273 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 36332 ||||||||||| || ||||| || || | ||| ||||| |||| |||||||| Sbjct 60642 TCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTAGTTTCACGG 60701 Query 36333 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 36392 || | ||| ||||| ||||| ||||||||||| | |||||| | ||||| ||||| Sbjct 60702 ATTAATGAAGAAGTTACAAGTGAACCGTGCATAGCTGAGAATAATGAACCACCAAATACA 60761 Query 36393 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 36452 || |||||||| | ||||||||| || ||||| | ||| ||||| || || || || ||| Sbjct 60762 CCAGCAACACCTAACATATGGAATGGGTGCATTAAGATGTTGTGCTCAGCTTGGAATACA 60821 Query 36453 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 36512 | ||| || ||||| || ||||| ||||| | |||||||||||||||||| ||||| Sbjct 60822 AGCATGAAGTTGAATGTACCTGAGATACCTAATGGCATACCATCAGAGAAAGAACCTTGA 60881 Query 36513 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 36572 || | ||||| | | ||||||||| ||||| ||||| || ||||| ||||| ||| Sbjct 60882 CCGATTGGGTAAATGATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAGTAAGCAACA 60941 Query 36573 CATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 36632 ||||| || | |||||||| | || | |||||| | || |||| ||||| Sbjct 60942 GCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGTAAGAA 61001 Query 36633 GAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCAC 36692 | | ||| | || || || | |||| | ||| || || || ||||| ||||||||| Sbjct 61002 CATACACCTAAGAAGAAATGACATACAACTAATTGGTAAGGACCACCGTTGTATAACCAC 61061 Query 36693 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGAT 36752 || || | | ||||||||||||||||||||||| || | ||| || ||||| || | | Sbjct 61062 TCATCTAAAGAAGCAGCTTCCCAGATTGGGTAGAAATGTAAACCAATCGCGTTTGAAGTT 61121 Query 36753 GGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 36812 || || | || || |||||||||||||| || || | ||||| || || ||||||||| Sbjct 61122 GGAACAACCGCACCTGAGATGATGTTGTTACCGTATAATAATGAACCAGAAACAGGCTCA 61181 Query 36813 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 36872 || |||||||| ||||| || ||||| ||||| | |||||| || | ||| |||| | Sbjct 61182 CGGATACCATCGATATCAACTGGAGGAGCAGCGATAAATGCGATGATGAATACTGTAGTT 61241 Query 36873 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTT 36932 || ||||| || | ||||||||||| ||| |||||||| || | || | ||||| | Sbjct 61242 GCAGTTAATAGAGTAGGGATCATTAATACACCAAACCAACCGATGTATAAACGGTTTTCA 61301 Query 36933 GTACTTGTAACCCAGTCACATAAAC 36957 || || || ||||| ||||| |||| Sbjct 61302 GTGCTAGTTACCCACTCACAAAAAC 61326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150452827751520