Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq880 567 2e-157 >seq880 Length=74269 Score = 567 bits (628), Expect = 2e-157 Identities = 720/986 (73%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| ||||||||| |||||||||||||||| ||| ||||||||||| ||||| | ||| Sbjct 60342 GCTAAATCAAGTGGAAAGTTGTGAGCATTTCTTTCATGCATTACTTCAATACCTAAGTTA 60401 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314 |||||||| | | ||| ||||||||| | | | ||| || || || ||||| Sbjct 60402 GCACGGTTAACAATATCAGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTGAT 60461 Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 5374 || |||||||| || || || | ||||| |||||||| || || || | || || | | Sbjct 60462 TGGTTGAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTGAAC 60521 Query 5375 CATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAG 5434 || || | ||| || ||||||| ||| | |||||| ||||| ||| |||||||| Sbjct 60522 CAAATACCAACTACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTAAAT 60581 Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTT 5494 ||| || |||||||| | | |||||||| |||||||| || || ||||| || ||| Sbjct 60582 GAAGCGTATTGGAAGATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGTAAGTT 60641 Query 5495 TCTTCCTCTTGGCCGAATTTATATCCATAGTT--CTGAGAAGTAAGCCCAGTTGTTTCAC 5552 ||||| ||||| || ||||| || || | ||| |||| || | ||| ||||||| Sbjct 60642 TCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCTGATTCGTTTTC--AGTAGTTTCAC 60699 Query 5553 GAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATA 5612 | || | |||||||| ||||| || |||||||| | ||| || | ||||| |||| Sbjct 60700 GGATTAATGAAGAAGTTACAAGTGAACCGTGCATAGCTGAGAATAATGAACCACCAAATA 60759 Query 5613 CCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATA 5672 | ||||||||||| | ||| ||||| || ||||| | ||| ||||| || || ||||||| Sbjct 60760 CACCAGCAACACCTAACATATGGAATGGGTGCATTAAGATGTTGTGCTCAGCTTGGAATA 60819 Query 5673 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCT 5732 | | ||| ||||| || ||||| |||||||| | |||||||||||| |||| || | Sbjct 60820 CAAGCATGAAGTTGAATGTACCTGAGATACCTAATGGCATACCATCAGAGAAAGAACCTT 60879 Query 5733 GTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCT 5791 | |||| ||||| | | ||||| | ||| ||||| ||||| |||||||| || || Sbjct 60880 GACCGATTGGGTAAATGATGAATACAGCTGTA-GCTGCAGCAACTGGTGCTGAGTAAGCA 60938 Query 5792 ACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAA 5851 || |||||||| ||||| ||||| | | || | |||||| | || |||| |||| Sbjct 60939 ACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGTAA 60998 Query 5852 GCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGC 5911 | | ||| | | ||| || | || || | |||||| || || || ||||| | | Sbjct 60999 GAACATACACCTAAGAAGAAATGACATACAACTAATTGGTAAGGACCACCGTTGTATAAC 61058 Query 5912 CATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAG 5971 || ||||| | | || ||||||||||| || ||||| ||||| ||||| ||||| || Sbjct 61059 CACTCATCTAAAGAAGCAGCTTCCCAGATTGGGTAGAAATGTAAACCAATCGCGTTTGAA 61118 Query 5972 CTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGT 6031 | || ||||| || ||||| ||||||||||| || || | || || || | || || Sbjct 61119 GTTGGAACAACCGCACCTGAGATGATGTTGTTACCGTATAATAATGAACCAGAAACAGGC 61178 Query 6032 TCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTA 6091 ||||| || || ||||| || ||||| || ||||| | ||||| | || ||| | ||| Sbjct 61179 TCACGGATACCATCGATATCAACTGGAGGAGCAGCGATAAATGCGATGATGAATACTGTA 61238 Query 6092 GTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTG 6151 ||||| ||||| || | || |||||||| ||||||||||| || | || | ||||| Sbjct 61239 GTTGCAGTTAATAGAGTAGGGATCATTAATACACCAAACCAACCGATGTATAAACGGTTT 61298 Query 6152 TTGGTGCTAGTAACCCAGTCACAGAA 6177 | |||||||| ||||| ||||| || Sbjct 61299 TCAGTGCTAGTTACCCACTCACAAAA 61324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152648004811680