Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq880 596 4e-166 >seq880 Length=74269 Score = 596 bits (660), Expect = 4e-166 Identities = 723/985 (73%), Gaps = 0/985 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 ||||| ||||| || |||||||| || || | |||||||| ||||| || ||||||| Sbjct 60342 GCTAAATCAAGTGGAAAGTTGTGAGCATTTCTTTCATGCATTACTTCAATACCTAAGTTA 60401 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| ||| ||||||||||| || || | || | ||||| || ||||| Sbjct 60402 GCACGGTTAACAATATCAGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTGAT 60461 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || |||||||| || || || | ||||| |||||||| || | || | ||| || | | Sbjct 60462 TGGTTGAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTGAAC 60521 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | | || ||||||||||| | |||||| ||||| ||| || ||||| Sbjct 60522 CAAATACCAACTACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTAAAT 60581 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 ||| || |||||||| | | |||||||| |||||||| || || ||||| || || Sbjct 60582 GAAGCGTATTGGAAGATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGTAAGTT 60641 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||||||||| || ||||| || || | ||| ||||| |||| |||||||| Sbjct 60642 TCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTAGTTTCACGG 60701 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||| ||||| ||||| ||||||||||| | |||||| | ||||| ||||| Sbjct 60702 ATTAATGAAGAAGTTACAAGTGAACCGTGCATAGCTGAGAATAATGAACCACCAAATACA 60761 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || |||||||| | ||||||||| || ||||| | ||| ||||| || || || || ||| Sbjct 60762 CCAGCAACACCTAACATATGGAATGGGTGCATTAAGATGTTGTGCTCAGCTTGGAATACA 60821 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | ||| || ||||| || ||||| ||||| | |||||||||||||||||| ||||| Sbjct 60822 AGCATGAAGTTGAATGTACCTGAGATACCTAATGGCATACCATCAGAGAAAGAACCTTGA 60881 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 || | ||||| | | ||||||||| ||||| ||||| || ||||| ||||| ||| Sbjct 60882 CCGATTGGGTAAATGATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAGTAAGCAACA 60941 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 26112 ||||| || | ||| |||| | || | |||||| | || |||| ||||| Sbjct 60942 GCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGTAAGAA 61001 Query 26113 GAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCAC 26172 | | || | || || || | |||| | ||| || || |||||||| || |||||| Sbjct 61002 CATACACCTAAGAAGAAATGACATACAACTAATTGGTAAGGACCACCGTTGTATAACCAC 61061 Query 26173 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC 26232 || || | | ||||||||||||||||||||||| || | ||| || ||||| || | Sbjct 61062 TCATCTAAAGAAGCAGCTTCCCAGATTGGGTAGAAATGTAAACCAATCGCGTTTGAAGTT 61121 Query 26233 GGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 26292 || || | || ||||||||||||||||| || || | ||||| || || ||||||||| Sbjct 61122 GGAACAACCGCACCTGAGATGATGTTGTTACCGTATAATAATGAACCAGAAACAGGCTCA 61181 Query 26293 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 26352 || |||||||| ||||| || ||||| ||||| | |||||| || | ||| |||| | Sbjct 61182 CGGATACCATCGATATCAACTGGAGGAGCAGCGATAAATGCGATGATGAATACTGTAGTT 61241 Query 26353 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTT 26412 || ||||| || | ||||||||||| ||| |||||||| || | || | ||||| | Sbjct 61242 GCAGTTAATAGAGTAGGGATCATTAATACACCAAACCAACCGATGTATAAACGGTTTTCA 61301 Query 26413 GTACTTGTAACCCAGTCACATAAAC 26437 || || || ||||| ||||| |||| Sbjct 61302 GTGCTAGTTACCCACTCACAAAAAC 61326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151992011666880