Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq232 118 1e-21 >seq232 Length=44964 Score = 118 bits (130), Expect = 1e-21 Identities = 388/596 (65%), Gaps = 13/596 (2%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 ||||||||||| || | || ||||| | | ||||| || || || || || ||| Sbjct 11762 CATGCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCGTTGGAGAATGTCAAT 11703 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 ||||| | | |||| ||||| | ||| | || || || ||||| || |||||| Sbjct 11702 CCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGGCACAGAAGGATCCGGAGAAGAAA 11643 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAA 37355 || |||||||| || ||||| || | || |||||| || | || | Sbjct 11642 ATTCCTTCAACGCAGGCGAATGCAACCAATCGCTCTGCGAAAGAATCGCTGGACTC---A 11586 Query 37356 ATCCAtttttttGTCCAATCTGCCTT-TAATTTAACACATTCAATTGTTTCAATTGCTTT 37414 |||||| | | | |||||||||||| | || | ||| | | ||| || || || | Sbjct 11585 ATCCATCTCATGGCCCAATCTGCCTTCTTCTTCACCAC-TGGTACTGTCTCGATGGCATG 11527 Query 37415 TAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474 || || ||| ||||| || ||| | || || || |||| || | ||||||||| Sbjct 11526 GAACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTCAAGCAGGAGACTATACAT 11467 Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAA 37534 || |||||||| ||||| || || || || ||||||||| || || || | | Sbjct 11466 CTCGCTATGAATATTCTCAATGGCGATTTGGAATCCATAAAAAGCTCTGGCCTCTGGGAT 11407 Query 37535 TTGAACATCGTTAAAAAACCTCTTA--GCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 || || || || ||||| || || | || || ||||| || || |||||| || Sbjct 11406 CTGCACCTCCTTCAAAAA--TCGTACCCCCAAATTCTCATTTACGATGCCATCAGATGCA 11349 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGAT--AATTTTTTCC 37650 |||||||| ||||| |||| || |||||||| || | | | || ||| || || Sbjct 11348 GCAAAGAATGCAAGCACATGAGAGATGAAATGTCTCTCGT--TGTCATTCAATCCTTCCC 11291 Query 37651 AATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCAC 37710 | | || || ||| | | |||||| || ||| | ||||| || ||| ||| Sbjct 11290 AGTGCTTGATGTCTCCTCCCAGATCAACCTCTTCAGCTGTCCAGAAGGAAGCCTCTGCCT 11231 Query 37711 GTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCTATCA 37766 || ||||| ||| || ||||||| | || || || | || |||| |||| Sbjct 11230 TCTTGTACATTTCCCAGATTTCATTATACTTGATCGGGAACAAGACGAATCGATCA 11175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592310284515200