Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq429 104 2e-17 seq634 91.5 1e-13 >seq429 Length=364352 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| |||| ||| ||| ||||| || || ||||| | || | || | || ||| Sbjct 147020 ACCAAGTGTAACGTTGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGCCCATCTTCC 146961 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCT 48676 |||||||| || || || |||| || ||| ||||| | ||||| | ||||| || || Sbjct 146960 AACTGCTTTCCAGCGAAAATCAATCTCTGCTGATCAGGTGGGATC-CCCTCTTTATCCTG 146902 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 |||||| || ||| | | | || || | ||| || |||| ||||| ||||| Sbjct 146901 AATCTTCGACTTGACATTCTCAATCGTATCAGATGACTCTACTTCCAGAGTAATAGTTTT 146842 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||||| ||||| || ||||||||||||||| Sbjct 146841 TCCCGTCAGGGTTTTAACGAAAATCTGCATCGTG 146808 >seq634 Length=251403 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || ||| ||||| || || ||||| | || | || | || ||| Sbjct 209629 ACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAATCTGCTAATGTGCGCCCATCTTCC 209570 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || || || |||| ||||| ||||| | |||| ||||||||||| | Sbjct 209569 AACTGCTTTCCAGCGAAAATCAAACGCTGCTGATCAGGTGGAATTCCCTCCTTGTCCTGA 209510 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | || || || | ||||||||||| || || || || Sbjct 209509 ATCTTAGACTTGACATTTTCGATAGTGTCAGAAGACTCCACCTCCAGGGTGATGGTCTTC 209450 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | ||||| ||||| || |||||| Sbjct 209449 CCTGTGAGTGTTTTCACAAAGATTTGCATC 209420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380933514444240