Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq880 711 0.0 >seq880 Length=74269 Score = 711 bits (788), Expect = 0.0 Identities = 727/946 (77%), Gaps = 2/946 (0%) Strand=Plus/Minus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||||||||| ||||| || ||||||||| | | | ||| | || ||||||| Sbjct 61284 TCGGTTGGTTTGGTGTATTAATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCA 61225 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | ||||| || || || |||||||||||||||||||||||| | || |||||| | |||| Sbjct 61224 TCGCATTTATCGCTGCTCCTCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTT 61165 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 || | | || ||||||||||||||||| ||||| || ||||| | |||||| || |||| Sbjct 61164 CATTATTATACGGTAACAACATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTG 61105 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 || | || ||||| || ||||||||||| || || | ||||||||||| || || |||| Sbjct 61104 GTTTACATTTCTACCCAATCTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTG 61045 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTC 162838 | |||| |||| | || || | || ||| | | || | | ||| |||||| Sbjct 61044 GTCCTTACCAATTAGTTGTATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTG 60985 Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898 |||||||| | |||| ||| |||||||||||||| |||||| |||||| ||||| |||| Sbjct 60984 AGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCAC 60925 Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162958 |||| ||||||| ||||| ||| | | || || ||||||||||||||||||||| Sbjct 60924 CAGTTGCTGCAGCTACAGCTGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTG 60865 Query 162959 ACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGC 163018 | | ||||| | ||||| || ||||| || |||| |||| | || |||||||| |||| Sbjct 60864 ATGGTATGCCATTAGGTATCTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGC 60805 Query 163019 ACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCAC 163078 |||||||| |||||||||| ||||||||| | || || || |||||||| ||||||||| Sbjct 60804 ACAACATCTTAATGCACCCATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCAT 60745 Query 163079 TCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGC 163138 | || |||||||||||||| ||||| |||||||| | ||| | ||||||||||| Sbjct 60744 TATTCTCAGCTATGCACGGTTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAA 60685 Query 163139 AAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTG 163198 | || ||| ||| | ||||| || || || ||||||||||| ||||||||||| || | Sbjct 60684 ACGAATCAGCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAG 60625 Query 163199 CTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTT 163258 |||||||||| ||||||||||| || |||||||| || || || || |||||||| |||| Sbjct 60624 CTGCTCATGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTT 60565 Query 163259 CACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTG 163318 || | ||||||||| | ||||| | || || || | || ||||||||||| | ||| Sbjct 60564 CATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTA 60505 Query 163319 TGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAG 163378 | |||||||||||||| ||| | || |||||||||||||||||||| || || || || Sbjct 60504 TTTCAACTATGGCATTTAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCAC 60445 Query 163379 GTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTT-GGTATGGAA 163437 ||| || || |||||||| ||||| ||||| | || |||| ||||| ||| Sbjct 60444 AAGGTCGTGTAATCAACACTTGGGCTGATATTGTTAACCGTGCTA-ACTTAGGTATTGAA 60386 Query 163438 GTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTG 163483 || ||||| || | |||||||||||||| |||||||| | |||| Sbjct 60385 GTAATGCATGAAAGAAATGCTCACAACTTTCCACTTGATTTAGCTG 60340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553078716067200