Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq880 713 0.0 seq152 84.2 2e-11 >seq880 Length=74269 Score = 713 bits (790), Expect = 0.0 Identities = 752/987 (76%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 162891 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162950 ||| || |||||||||||| || | ||||| | || |||||||||| || ||| | Sbjct 61325 TTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 61266 Query 162951 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163009 ||||| || ||||| || | ||||||| | || |||||| |||| || ||||||||| Sbjct 61265 AATGATCCCTACTCTATTAACTGCAACTA-CAGTATTCATCATCGCATTTATCGCTGCTC 61207 Query 163010 CCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACA 163069 | || || || || || || ||||||||||| || |||||||| | | || || |||| Sbjct 61206 CTCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACA 61147 Query 163070 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 163129 |||||||||| ||||| ||||||||| |||| ||||| |||||| | || ||||| || | Sbjct 61146 ACATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAA 61087 Query 163130 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 163189 |||||||||| || || | ||||||||| | || ||||||||||||| |||| | || | Sbjct 61086 TCTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTG 61027 Query 163190 TCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATC 163249 | | ||| ||| | | || | | | | || ||||| ||||| |||||| | || | | Sbjct 61026 TATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCC 60967 Query 163250 GCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCG 163309 | ||||||||||| || |||||| ||| || ||||| ||||| ||||| ||||| | | Sbjct 60966 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAG 60907 Query 163310 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCA 163369 | || ||| | | || || |||||||||||||||||||||| | |||||| | || | Sbjct 60906 CTGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTA 60847 Query 163370 TCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 163429 |||| || |||||||||| ||||||||| |||||||| |||||||||||| | ||||||| Sbjct 60846 TCTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACC 60787 Query 163430 CCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATG 163489 | ||||||||||| || || |||||||| || ||||| ||| | ||||| || ||||| | Sbjct 60786 CATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACG 60727 Query 163490 GCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATG 163549 | ||||| || |||||| | ||||||| || ||||||| || ||| ||| | | Sbjct 60726 GTTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAG 60667 Query 163550 GTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCG 163609 ||||||| ||||||||||||||||| || ||||||||||| || || ||||| ||||| | Sbjct 60666 GTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTG 60607 Query 163610 GTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGG 163669 ||||||| ||||||||||| || ||||| |||||| | | ||||||||| | | Sbjct 60606 GTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAG 60547 Query 163670 CAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCA 163729 | || ||||| || || || || ||||| ||||| | || | || |||||||| | Sbjct 60546 CTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTA 60487 Query 163730 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACA 163789 || | || ||||||||||||||||| || | | ||| || |||||||| |||||| Sbjct 60486 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACA 60427 Query 163790 CTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 163849 ||||||| || | ||||||| ||| | ||||| ||||| |||||||| | || | Sbjct 60426 CTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATG 60367 Query 163850 CACACAACTTCCCACTCGATCTTGCTG 163876 | |||||||| ||||| ||| | |||| Sbjct 60366 CTCACAACTTTCCACTTGATTTAGCTG 60340 Score = 459 bits (508), Expect = 3e-124 Identities = 719/1021 (70%), Gaps = 6/1021 (1%) Strand=Plus/Plus Query 164607 TTCGACATCCTAGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGA 164666 |||||||| | |||||||||||| || ||||| || || ||||| || |||||||| Sbjct 49503 TTCGACATTGTTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGT 49562 Query 164667 TTACTACTTCTTCCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTT 164726 ||| || | | || ||||||| | || | || || ||| | ||||| | | ||| Sbjct 49563 TTATTATTATTACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTT 49622 Query 164727 GTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTC 164786 || || ||||| || |||||| | |||||||| | | | |||||| ||| || | Sbjct 49623 GTTACATCATGGTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAATTTCTTA 49682 Query 164787 ACAGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 164846 ||||| || || || || ||||| || |||||||||||| | | || | ||||| Sbjct 49683 ACAGCTGCAGTTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGC 49742 Query 164847 CCTGAGTCTC-AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGT 164905 || || | | ||| || ||| | || ||||| ||| | || || |||||| ||| || Sbjct 49743 CCAGAAGCACAAGGCGACTTTAC-TCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGT 49801 Query 164906 GGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG 164965 || | || ||| | || || |||||||||| ||| | || || |||||| | ||||| Sbjct 49802 TGCATTACATGGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACG 49861 Query 164966 TCTCA-TTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 165024 | ||| | || ||||| || || || || || ||||| | || ||||| ||||| | Sbjct 49862 T-TCAGTAAAAATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCG 49920 Query 165025 TCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 165084 | || ||| | ||||| || | ||||| || | ||||| || || || |||| Sbjct 49921 TATCAGTTTTCTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTG 49980 Query 165085 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCA 165144 | || || |||||||| |||| | | ||| | ||||| ||||| |||||||| | | Sbjct 49981 GTGTTGCCGCAATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAA 50040 Query 165145 ACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTC 165204 |||| ||||||||||||||||| || ||| | || || | ||| || |||| |||||| | Sbjct 50041 ACCCATTCCATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCC 50100 Query 165205 ATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGG 165264 |||| | || || ||||| ||||||| || ||||| || |||||||| || | Sbjct 50101 ATGGTGCAACTGTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 50160 Query 165265 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 165324 | ||| | | || || | ||||| || ||||| ||||| ||||| || || ||||||| Sbjct 50161 CATTTAACCCAACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGT 50220 Query 165325 CGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 165384 | || || || || | || ||||| || || || ||| | ||||| || ||||| |||| Sbjct 50221 CACAAATTTTTGGTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTG 50280 Query 165385 TGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTC 165444 | || || | ||| | |||| | |||||| | | ||| | ||| | ||| | | Sbjct 50281 TACCAGTAACTGGTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCTTTAAACTTAC 50340 Query 165445 GTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCT 165504 |||| || ||||| || ||| || || | || || |||||||| ||||| || || | Sbjct 50341 GTGCATATGATTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTT 50400 Query 165505 TCTACACCAAAAA-CATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGAT 165563 |||| || ||||| ||| |||| ||||||| | || |||||| |||| || ||| Sbjct 50401 TCTATACAAAAAATCAT-TTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGAT 50459 Query 165564 CAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAA 165623 || || |||||||| || | |||||||| || ||||| || | || ||||| |||||| Sbjct 50460 CAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCTTTAA 50519 Query 165624 T 165624 | Sbjct 50520 T 50520 >seq152 Length=72664 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 164087 GCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAA 164146 |||||| |||| | |||||||| |||||||| || ||||| || || ||||| || Sbjct 24938 GCAGGAATTGACCTCCCATACTCTTGCCGTGCTGGAGCCTGCTCTTCCTGCGCAGGAAAG 24997 Query 164147 ATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCATTCCTAGACGATGATCAGATTGCA 164206 | ||||||||||||| ||| || ||||| ||| | || || || ||||| || Sbjct 24998 GTCCAGGCTGGAACTGTTGACCAGTCCGACCAGTCTTTCTTGGATGACGACCAGATGGCC 25057 Query 164207 GCAGGATTCGTGCTTACGTGTGTAGCATATCCAACATCTGATTG 164250 ||||| ||||| || || || || || ||||| || || || Sbjct 25058 AATGGATTTGTGCTCACCTGCGTTGCCTACCCAACCTCCGACTG 25101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563203404694400