Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq232 197 3e-45 seq457 104 4e-17 >seq232 Length=44964 Score = 197 bits (218), Expect = 3e-45 Identities = 563/856 (66%), Gaps = 22/856 (3%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || || ||||| ||||| ||||| |||||||| |||| ||| || || ||| Sbjct 12050 TGGTACTCGCCAACTCTCTTCTCGAAGAAATTTGTCTTTCCCTGCAAAGAAATCAGTTCC 11991 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCAG 47958 || | ||| || |||| || |||||| ||||| ||| | |||| || Sbjct 11990 ATCCAATCGAATGGATTGGCAACATTGTACACCT-TGTCATTCCCCAGGGCAACCAGAAG 11932 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 ||| || || | || ||||| | ||||||||| | ||||||||| || ||| Sbjct 11931 TCTATCAGCTACAAATTCAATGTACTGTGACATGAGCCTCGCGTTCATGCCGATCAGGTC 11872 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT--C 48076 || |||| || | | |||||||||||||| | ||||| | | ||| || | Sbjct 11871 GACAGGCAGGGCGTCGCAAATAAACTCCTTCTCTAATTCAACGGCGTTCGTCACGATATC 11812 Query 48077 TGC--TTAACGCGGGACT--CTGAGGGT-TTGTTGCGCAGGTGCTTGGCATAGAGCATGC 48131 ||| || | | || ||||| | |||||| ||| | | |||| | || Sbjct 11811 TGCGATTCTCTC----CTTGCTGAGCTTGTTGTTGAGCAAG------GAGTAGATGAGGC 11762 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 | ||||| || |||| | || || || || ||| | | |||||||||| | | Sbjct 11761 ATGCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCGTTGGAGAATGTCAATC 11702 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 | || | | ||| | || |||||||||| |||| || ||| || || |||||||| | Sbjct 11701 CTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGGCACAGAAGGATCCGGAGAAGAAAA 11642 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 | || || || ||||| || | | |||| |||||||| || || | || | | Sbjct 11641 TTCCTTCAACGCAGGCGAATGCAACCAATCGCTCTGCGAAAGAATCG--CTGGACTCA-A 11585 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 |||| | ||||| |||||||||||||| | ||| | ||||| ||||| ||| Sbjct 11584 TCCATCTCATGGCCCAATCTGCCTTCTTCTTCACCACTGGTACTGTCTCGATGGCATGGA 11525 Query 48372 AGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 | ||||| || ||| | | ||| | || || ||||| ||||||| Sbjct 11524 ACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTCAAGCAGGAGACTATACATCT 11465 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | || | |||||| || ||||| ||||| || || || || |||||||| | || Sbjct 11464 CGCTATGAATATTCTCAATGGCGATTTGGAATCCATAAAAAGCTCTGGCCTCTGGGATCT 11405 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 |||| || | | |||| || || ||||||||| || || ||||| || ||||||| Sbjct 11404 GCACCTCCTTCAAAAATCGTACCCCCAAATTCTCATTTACGATGCCATCAGATGCAGCAA 11345 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT 48611 |||| ||||| ||||| | |||||| | |||||||| | | | | |||| || Sbjct 11344 AGAATGCAAGCACATGAGAGATGAAATGTCTCTCGTTGTCATTCAATCCTTCCCAGTGCT 11285 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGT 48671 | |||| ||||| || || ||||| | ||||||||||| || ||| || |||| Sbjct 11284 TGATGTCTCCTCCCAGATCAACCTCTTCAGCTGTCCAGAAGGAAGCCTCTGCCTTCTTGT 11225 Query 48672 ACATGCCCCATATGTC 48687 |||| |||| || || Sbjct 11224 ACATTTCCCAGATTTC 11209 >seq457 Length=513114 Score = 104 bits (114), Expect = 4e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 213527 TGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTG 213586 ||||||||| ||||| || ||||||| ||| ||| || || ||||||| |||||| || Sbjct 208532 TGTGTACTCAATGATTTCAGTGCACAAGTTACTGGATTTAATTGTGCCCAAGTTCTGTTG 208591 Query 213587 GTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGG 213628 || |||||| |||||||||||||||| |||||||||| || Sbjct 208592 ATTAGACTTTCTGTTGGCAGAATCCTTGAAGAGCATGTAAGG 208633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931522553139200